YRC Public Data Repository - Protein Structure Prediction

Protein:	img1
Organism:	Schizosaccharomyces pombe
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for img1.

Description	E-value	Query Range	Subject Range
gi\|87282734, gi\|... - gi\|87302851\|ref\|ZP_01085662.1\| 50S ribosomal protein L19 [Synechococcus sp. WH 5701], gi\|87282734\|gb...	171.0	[0..27]	[173..43]
RL19_XANP2 - 50S ribosomal protein L19 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplS PE=3 SV...	169.0	[0..52]	[173..3]
RL19_CAUCR - 50S ribosomal protein L19 OS=Caulobacter crescentus GN=rplS PE=3 SV=1 RL19_CAUCR - 50S ribosomal protein L19 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rplS PE=3 SV=1	167.0	[0..50]	[170..4]
RL19_BRADU - 50S ribosomal protein L19 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 1479... RL19_BRAJA - 50S ribosomal protein L19 OS=Bradyrhizobium japonicum GN=rplS PE=3 SV=1	167.0	[0..49]	[173..1]
gi\|23014871 - gi\|23014871\|ref\|ZP_00054667.1\| COG0335: Ribosomal protein L19 [Magnetospirillum magnetotacticum MS-1...	167.0	[0..48]	[169..1]
gi\|88788832, gi\|... - gi\|88807618\|ref\|ZP_01123130.1\| 50S ribosomal protein L19 [Synechococcus sp. WH 7805], gi\|88788832\|gb...	167.0	[0..52]	[173..47]
RL19_BACLD - 50S ribosomal protein L19 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	167.0	[0..59]	[172..6]
RL19_MAGSA - 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 S...	167.0	[0..48]	[169..1]
RL19_GEOSE - 50S ribosomal protein L19 OS=Geobacillus stearothermophilus GN=rplS PE=3 SV=1	166.0	[0..59]	[170..6]
RL19_PEDPA - 50S ribosomal protein L19 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplS PE=3 SV=1	166.0	[0..60]	[176..7]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNAKHFFNL GLGFQWLQKR GIGSLKRPYN FPKPVPGPKH KDVLSLFEKK CRSVLDEQSE  60
   61 RFKMFHRSQP NRVRPGAVLL VESYSKYPSK DSVNRFAGYL LRIRHRGPKS SILLRNVVMG 120
  121 VGVEYLLPIY SPQIKRIVVL KENGLSKRPR RAYLSYLRQP RFRLPPVESL VRKYIEQNQH 180
  181 KP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1vs6P
Description:	No description for 1vs6P was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.75663213016935	bayes_pls_golite062009
structural molecule activity	9.17485893013108	bayes_pls_golite062009
RNA binding	1.4457902513736	bayes_pls_golite062009
nucleic acid binding	0.773773893475929	bayes_pls_golite062009
transcription regulator activity	0.670497135017846	bayes_pls_golite062009
binding	0.62001932368397	bayes_pls_golite062009
DNA binding	0.218728391423838	bayes_pls_golite062009
translation regulator activity	0.20179424040045	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.177099375659271	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: