YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1709.09
Organism:	Schizosaccharomyces pombe
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1709.09.

Description	E-value	Query Range	Subject Range
RRFC_ORYSI - Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2 gi\|143811453 - gi\|143811453\|sp\|P83648\|RRFC_ORYSA Ribosome recycling factor, chloroplast precursor (Ribosome-releasi... RRFC_ORYSJ - Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2	253.0	[0..7]	[244..35]
RRFC_SPIOL - Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1	242.0	[0..9]	[244..41]
RRF_ERWCT - Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1 RRF_PECAS - Ribosome-recycling factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=frr PE...	238.0	[0..56]	[244..3]
RRF_DESHD - Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=frr PE=3 SV=...	238.0	[0..55]	[244..2]
RRF_LEGPA - Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1	237.0	[0..55]	[244..2]
RRF_LEGPL - Ribosome-recycling factor OS=Legionella pneumophila (strain Lens) GN=frr PE=3 SV=1 RRF_LEGPC - Ribosome-recycling factor OS=Legionella pneumophila (strain Corby) GN=frr PE=3 SV=1 RRF_LEGPH - Ribosome-recycling factor OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC...	236.0	[0..55]	[244..2]
RRF_DESHY - Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain Y51) GN=frr PE=3 SV=1	236.0	[0..55]	[244..2]
RRF_THEEB - Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1 RRF_SYNEL - Ribosome-recycling factor OS=Synechococcus elongatus GN=frr PE=3 SV=1	236.0	[0..59]	[244..3]
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii GN=frr PE=3 SV=1 RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	236.0	[0..55]	[244..2]
RRF_VIBCH - Ribosome-recycling factor OS=Vibrio cholerae GN=frr PE=3 SV=1 RRF_VIBCM - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain M66-2) GN=frr PE=3 SV=1 gi\|229507669, gi... - gi\|229507669\|ref\|ZP_04397174.1\| ribosome recycling factor [Vibrio cholerae BX 330286], gi\|229355174\|... gi\|254286071, gi... - gi\|254286071\|ref\|ZP_04961032.1\| ribosome recycling factor [Vibrio cholerae AM-19226], gi\|197752556\|r... gi\|229512136, gi... - gi\|229512136\|ref\|ZP_04401615.1\| ribosome recycling factor [Vibrio cholerae B33], gi\|229352101\|gb\|EEO... gi\|153827697, gi... - gi\|153827697\|ref\|ZP_01980364.1\| ribosome recycling factor [Vibrio cholerae MZO-2], gi\|149737829\|gb\|E... gi\|229343960, gi... - gi\|229519271\|ref\|ZP_04408714.1\| ribosome recycling factor [Vibrio cholerae RC9], gi\|229343960\|gb\|EEO... gi\|229522203, gi... - gi\|229522203\|ref\|ZP_04411620.1\| ribosome recycling factor [Vibrio cholerae TM 11079-80], gi\|22934112... gi\|229337841, gi... - gi\|229524260\|ref\|ZP_04413665.1\| ribosome recycling factor [Vibrio cholerae bv. albensis VL426], gi\|2... gi\|229528740, gi... - gi\|229528740\|ref\|ZP_04418130.1\| ribosome recycling factor [Vibrio cholerae 12129(1)], gi\|229332514\|g... gi\|229607173, gi... - gi\|229607173\|ref\|YP_002877821.1\| ribosome recycling factor [Vibrio cholerae MJ-1236], gi\|229369828\|g... gi\|254845092, gi... - gi\|254849387\|ref\|ZP_05238737.1\| ribosome recycling factor [Vibrio cholerae MO10], gi\|254845092\|gb\|EE... RRF_VIBC3 - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... RRF_VIBCH - Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... gi\|153221229, gi... - gi\|153221229\|ref\|ZP_01952244.1\| ribosome recycling factor [Vibrio cholerae MAK 757], gi\|124119758\|gb... gi\|153803002, gi... - gi\|153803002\|ref\|ZP_01957588.1\| ribosome recycling factor [Vibrio cholerae MZO-3], gi\|124121445\|gb\|E...	235.0	[0..55]	[244..2]

Back

Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRIISKATL FQDSQRFHTS ILSPRCAFHN GGILHKKAKD KDVKHDHDPE FANSFNKMLK  60
   61 SFEAKMQLVH EKLAKRFQEA VVLPSQGNFT QLEALFIPSK SIKAPTPSRL LREIAAVSQK 120
  121 GSQQIIIRPF EDVDIKNILK AIEDSRYPFV ANKLNASTIE VKPQRTTLES RQQLAKVLEG 180
  181 YAKDSREQLS AMRTELKKEI AKNKKSKAWT SDDCYKAEAE MQTAFKNAIN LLDSGLKSAL 240
  241 KKVI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.0
Match:	1ek8A
Description:	Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
translation regulator activity	4.3587179630028	bayes_pls_golite062009
translation factor activity, nucleic acid binding	4.16037247039451	bayes_pls_golite062009
nucleic acid binding	3.46266898174641	bayes_pls_golite062009
binding	2.50924072655137	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: