YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC4G3.15c
Organism:	Schizosaccharomyces pombe
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC4G3.15c.

Description	E-value	Query Range	Subject Range
gi\|108710949, gi... - gi\|108710949\|gb\|ABF98744.1\| NOT2/NOT3/NOT5 family protein, expressed [Oryza sativa (japonica cultiva...	239.0	[0..2]	[169..446]
VIP2_NICBE - Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=...	235.0	[0..2]	[172..434]
gi\|49067697, gi\|... - gi\|71004008\|ref\|XP_756670.1\| hypothetical protein UM00523.1 [Ustilago maydis 521], ref\|XP_398138.1\| ...	231.0	[0..2]	[171..355]
gi\|92897645 - gi\|92897645\|gb\|ABE93791.1\| NOT2/NOT3/NOT5 [Medicago truncatula]	228.0	[0..2]	[172..489]
gi\|79338143 - gi\|79338143\|ref\|NP_563795.2\| transcription regulator [Arabidopsis thaliana]	227.0	[0..2]	[169..342]
gi\|74204187 - gi\|74204187\|dbj\|BAE39856.1\| unnamed protein product [Mus musculus]	222.0	[0..2]	[169..357]
gi\|73968699 - gi\|73968699\|ref\|XP_531676.2\| PREDICTED: similar to CCR4-NOT transcription complex subunit 2 (CCR4-as...	222.0	[0..2]	[169..367]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLESLLPIIR MEDSEMSTLQ LGCDLAALGF DLAPVEEDRL ISTNLFSPWA ELNTKKPVSQ  60
   61 PMFKLPACYK NVNPPPAISK IFQFSDETLF YIFYTMPRDV MQEAAAQELT NRNWRFHKEL 120
  121 RVWLTPVPGM KPLQRTPQFE RGYYMFFDPI HWKRIKKDFL LMYAALEDRA QSAVHS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.259637
Match:	PF04153.9
Description:	No description for PF04153.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits