| Protein: | dus3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 617 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dus3.
| Description | E-value | Query Range |
Subject Range |
|
|
407.0 | [0..3] | [612..83] |
|
|
401.0 | [0..3] | [612..76] |
|
|
400.0 | [0..3] | [612..82] |
|
|
391.0 | [0..3] | [612..67] |
|
|
390.0 | [0..3] | [612..70] |
|
Region A: Residues: [1-112] |
1 11 21 31 41 51
| | | | | |
1 MAELETGAVP IREEFLVKQD GNKKRKRKER GQNKRREKIH VKENNALCPA ISIGNECPYK 60
61 ENCKFPHDVE AYLATKAPDI GDKCPIFERY GVCPAGFKCR WLAGHVVINA DG
|
| Detection Method: |  |
| Confidence: | 16.522879 |
| Match: | 1rgoA |
| Description: | Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [113-223] |
1 11 21 31 41 51
| | | | | |
1 KYELIKKPDG QFTLFTVNTV GKEVQRKLRT KQLDLSKAES IISAVLGEEK PDPSSKVSNI 60
61 PEENRDATSA ISEGKETESV SLEETGVLKN QTVSVNVDLK EISSQARSNI A
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [224-617] |
1 11 21 31 41 51
| | | | | |
1 LPTLRPQEKN LIDWRDRKIL APLTTVGNPP FRRLCGSLGA DTFYSEMAMC YPLMQGHQPE 60
61 WALVRGLNYE REMMRGGRRG ILGVQLATGK LWQATKTAQV IAEQCDGVDF LDLNCGCPID 120
121 LVFRQGAGSS LLENPGRLLR NLQGMDAVSG QIPVTVKLRM GNKDDHPVVK NLIGRIFNET 180
181 NTSAATLHGR SRQQRYSKNA NWDYIGEIAS KVKSMNERID ELPEDSLRTQ PLSLIGNGDC 240
241 YSWQDWYDGV NKGVDTVMIA RGALVKPWIF EEIEARQFID KSSTQRLEML EQYCNNGLEY 300
301 WGSDSQGVNT TRRFFLEFMS FFHRYTPIAL YEVQRPRLND RPPLYTARDE METLLASNKV 360
361 TDWVKLSEFF LGPTPERFTF TPKHKSNSVE EAEG
|
| Detection Method: | |
| Confidence: | 38.39794 |
| Match: | 1vhnA |
| Description: | Crystal structure of a putative flavin oxidoreductase with flavin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.13899087582327 | bayes_pls_golite062009 |
| catalytic activity | 1.94749091175302 | bayes_pls_golite062009 |
| tRNA dihydrouridine synthase activity | 1.94490879164338 | bayes_pls_golite062009 |
| binding | 1.2785695107981 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on the CH-CH group of donors | 0.876786102965635 | bayes_pls_golite062009 |
| oxidoreductase activity | 0.80115790656025 | bayes_pls_golite062009 |
