YRC Public Data Repository - Protein Structure Prediction

Protein:	ppk32
Organism:	Schizosaccharomyces pombe
Length:	749 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ppk32.

Description	E-value	Query Range	Subject Range
gi\|115430243, gi... - gi\|14041817\|dbj\|BAB55459.1\| kinase-like protein splice variant 1 [Homo sapiens], gi\|119594802\|gb\|EAW...	346.0	[0..19]	[743..14]
CG1951-PA - This gene is referred to in FlyBase by the symbol Dmel\CG1951 (CG1951, FBgn0039623). It is a protein...	344.0	[0..4]	[745..16]
gi\|109098411, gi... - gi\|109098411\|ref\|XP_001089714.1\| PREDICTED: similar to SCY1-like 2 protein isoform 4 [Macaca mulatta...	336.0	[0..14]	[644..27]
gi\|76658144, gi\|... - gi\|76658144\|ref\|XP_874349.1\| PREDICTED: similar to SCY1-like 1 isoform 2 [Bos taurus], gi\|119919261\|...	336.0	[0..32]	[743..29]
gi\|114578977 - gi\|114578977\|ref\|XP_001151682.1\| PREDICTED: similar to SCY1-like 2 (S. cerevisiae) [Pan troglodytes]	336.0	[0..14]	[644..27]

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Predicted Domain #1

Region A:
Residues: [1-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLANALRLVS NSKKIKYDYD IQKENSVQVG PWTVYSASKK GTNEEVSVFT FDKKNLSTLL  60
   61 KRGSIDSNLK TNYVLELLRK DVSSLSRLRH PSLLQVVEPL EESKSSMSFV TRRIQSMLQD 120
  121 FIKSSNGGFS NYGSSANGKS SGNALEEVEI QKGLLQIIDG LVFLHGSAKV IHYNIRPSSV 180
  181 VVDAKGDWKL CGFSFSQSVE SARYEFNDYD FGIPSSLQQS MDFLAPEYIT HEIAGPESDV 240
  241 FSFGCLIYSI FNKNQSIINA NNHLLSYEKE ITSLNSPTFI ESKNLPSENL KSLLKETLAV 300
  301 DPKQRASMFE LERSPYFTGS AIAALRFLES FPEKLPSEKV SFMESLSKNL TTFPYRIQSQ 360
  361 KILPTLLDHL NDQKLVPSLL PCIFEISKGL DSSIFSSKVF TAIFPIISAA NSYPERVPLC 420
  421 IFQYMDCLKS KLPSGEFLSK IVPFIYGCFE N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	2acxA
Description:	No description for 2acxA was found.

Predicted Domain #2

Region A:
Residues: [452-570]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSLNVQTTSI QILGTLLDII DVTTVKSSIC PKLYHSFSVT NQLDVKVAIL DTFNVFINQK  60
   61 FLDSFAIVDK LLPVLEKVKT REPTVVMGMV TVYISAGAII PEETVHEQVI PRLWILSVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	2nylA
Description:	No description for 2nylA was found.

Predicted Domain #3

Region A:
Residues: [571-749]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSLSLEQYNK CMREIRSLSD AVQKSHAKKL QSKPSSVVPN RITTDPFSSQ TKEATSKPSS  60
   61 ISPNKATTNI FTSQASLSSQ GVARETSSAS SYRSYSQRAS TPAVTAKSSF HYATPTSGLS 120
  121 NFNSVTPSSS ASLYPPLIPS EARTPSVQPA NRRVTTPVVN QNTVTSDSSN DLGGWKSLL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.41
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits