YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21B10.09
Organism:	Schizosaccharomyces pombe
Length:	519 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21B10.09.

Description	E-value	Query Range	Subject Range
gi\|159127892 - gi\|159127892\|gb\|EDP53007.1\| SD08430p [Aspergillus fumigatus A1163] gi\|71000369, gi\|... - gi\|71000369\|ref\|XP_754879.1\| SD08430p [Aspergillus fumigatus Af293], gi\|66852516\|gb\|EAL92841.1\| SD08...	233.0	[0..8]	[512..146]
gi\|147906204, gi... - gi\|46249647\|gb\|AAH68928.1\| MGC83170 protein [Xenopus laevis], gi\|147906204\|ref\|NP_001084638.1\| hypot...	221.0	[0..12]	[514..14]
gi\|39970505, gi\|... - gi\|86196420\|gb\|EAQ71058.1\| hypothetical protein MGCH7_ch7g465 [Magnaporthe grisea 70-15], gi\|3997050...	221.0	[0..12]	[517..8]
gi\|68477273, gi\|... - gi\|68477432\|ref\|XP_717187.1\| hypothetical protein CaO19.3782 [Candida albicans SC5314], gi\|68477273\|... orf19.11263, orf... - orf19.3782 CGDID:CAL0001296 Assembly 19, Contig19-10192 (26292, 24631) CDS, reverse complemented, tr...	220.0	[0..26]	[512..46]
gi\|46129240, gi\|... - gi\|46129240\|ref\|XP_388981.1\| hypothetical protein FG08805.1 [Gibberella zeae PH-1], gi\|42549162\|gb\|E...	219.0	[0..11]	[516..45]
gi\|85115673 - gi\|85115673\|ref\|XP_964918.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28926715, gi\|... - gi\|32422099\|ref\|XP_331493.1\| hypothetical protein [Neurospora crassa], gi\|28926715\|gb\|EAA35682.1\| hy...	218.0	[0..10]	[512..7]
gi\|49095024, gi\|... - gi\|67537332\|ref\|XP_662440.1\| hypothetical protein AN4836.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	216.0	[0..15]	[511..48]
gi\|32766677, gi\|... - gi\|41055797\|ref\|NP_957402.1\| solute carrier family 33 (acetyl-CoA transporter), member 1 [Danio reri...	210.0	[0..51]	[511..63]
gi\|115385126, gi... - gi\|115385126\|ref\|XP_001209110.1\| hypothetical protein ATEG_01745 [Aspergillus terreus NIH2624], gi\|1...	207.0	[0..8]	[510..40]
gi\|83773286 - gi\|83773286\|dbj\|BAE63413.1\| unnamed protein product [Aspergillus oryzae] gi\|169780164 - gi\|169780164\|ref\|XP_001824546.1\| hypothetical protein [Aspergillus oryzae RIB40]	205.0	[0..15]	[513..18]

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Predicted Domain #1

Region A:
Residues: [1-519]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFKAHHRSI TRQDIELEDL ENAPASIASI ENDTLEANVG STPLTAKQKR NIYFLILLYL  60
   61 IQGVPMGLVR GSIPYFLKPN VSYSDLATYS LAAYPYSLKV LWSPIVDTYY CRSFGRRKTW 120
  121 VVPCMLLISS TLLLFSYNVD TWISKGSSYI NSFTTWSFLL VFVCATQDIA VDGWSLNMLN 180
  181 PEQLSYASTA QTVGLNTGFF LSFTILLVFT SPEFANTFIR SIPSNEGLIT LSGYIKFWAY 240
  241 FTFIASVLVC FWDESNHQEI ANISDMWKTI RAALSLKNMR QLLIVHTLGK VGFVANETLT 300
  301 LLKATEFGLS NEMLSLIILI NFPLGLALGV YTGRISNYRP LDIWLKGYWG RVVSILLNTI 360
  361 LVYMVSNWKH RFPVFFPIFL CYTLNASFST IQFVALGVFH SKISDPHIGG TYMTILNTLS 420
  421 NLGGSWPQYV MLRMADLLTV SSCSTAPHLT CSADAQKKEC QALGGTCLYK RDGYYLTSIV 480
  481 GIFLAISICV SLITPVVRRL TKAPISSWHI HSKIAETYT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.154902
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.09176719149278	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
substrate-specific transporter activity	3.3426261924492	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.29689809004391	bayes_pls_golite062009
ion transmembrane transporter activity	1.94035843948137	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
cation transmembrane transporter activity	1.5181741634556	bayes_pls_golite062009
binding	1.3181781780038	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
polyol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.812001619402678	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: