YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1604.18c
Organism:	Schizosaccharomyces pombe
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1604.18c.

Description	E-value	Query Range	Subject Range
gi\|114619256 - gi\|114619256\|ref\|XP_001158823.1\| PREDICTED: CHMP family, member 7 isoform 4 [Pan troglodytes]	301.0	[0..16]	[442..21]
CHMP7 - CHMP family, member 7	301.0	[0..16]	[442..21]
CHMP7_PONPY - Charged multivesicular body protein 7 - Pongo pygmaeus (Orangutan) CHMP7_PONAB - Charged multivesicular body protein 7 OS=Pongo abelii GN=CHMP7 PE=2 SV=1	299.0	[0..16]	[442..21]
gi\|42550742, gi\|... - gi\|46116834\|ref\|XP_384435.1\| hypothetical protein FG04259.1 [Gibberella zeae PH-1], gi\|42550742\|gb\|E...	299.0	[0..13]	[399..9]
CHMP7_MOUSE - Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1 SV=1	297.0	[0..16]	[442..21]
gi\|73994030 - gi\|73994030\|ref\|XP_851170.1\| PREDICTED: similar to CHMP family, member 7 [Canis familiaris]	296.0	[0..16]	[442..21]
gi\|149049867, gi... - gi\|34875283\|ref\|XP_344431.1\| PREDICTED: similar to CHMP family, member 7 [Rattus norvegicus], gi\|157...	296.0	[0..16]	[442..21]
gi\|145014910, gi... - gi\|39944326\|ref\|XP_361700.1\| hypothetical protein MGG_04174 [Magnaporthe grisea 70-15], gb\|EAA50415....	296.0	[0..15]	[432..11]
gi\|61823217, gi\|... - gi\|61823217\|ref\|XP_615505.1\| PREDICTED: hypothetical protein isoform 2 [Bos taurus], gi\|149642791\|re...	296.0	[0..16]	[442..21]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKEKVNAL EFSVNKGIFT KTRLKSLYSD FTSLFIKNPE GFLANVNTWR EAIETSAWSG  60
   61 KLNSRIILVF DETFESAFSS PALGRPLSLG AVAAYWIQQG VWLRKQDFLN DCKKGNLVRE 120
  121 DGFSIFSILR WSFQKLGFQN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [141-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QASSILSNRS PSGQYVIRKN IEKLACLVHN EAMRRCSSYT SAIYTWDFFQ DTFGSLYWEE  60
   61 GKLNKDEMEC LLNWMCYQKH VLIFDSKIIK FLPNSQIDAQ LASIDKSIDG SVADLIQARA 120
  121 SIAQRSEFLN EELEQLSQVL NQAVKKGEKT IAITYLRRKK ILSKDLERKV SSRLQLDTII 180
  181 SNIDNAVDNK ILLIAMSSGS EALDAILAQM GGTEKVEDVL ENVNDTLARS EEIDATIQTY 240
  241 NPQNIDLEDE AVEKEWQDLV AEEQKVEDIV STLGNVSLKT PSDTFTLTNT DSDKKTSKPE 300
  301 KIQAELVEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits