YRC Public Data Repository - Protein Structure Prediction

Protein:	pep3
Organism:	Schizosaccharomyces pombe
Length:	900 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pep3.

Description	E-value	Query Range	Subject Range
gi\|151556109, gi... - gi\|76627517\|ref\|XP_596982.2\| PREDICTED: similar to vacuolar protein sorting protein 18 [Bos taurus],...	671.0	[0..22]	[869..28]
gi\|74000145 - gi\|74000145\|ref\|XP_544627.2\| PREDICTED: similar to vacuolar protein sorting 18 [Canis familiaris]	664.0	[0..22]	[869..150]
gi\|26325096 - gi\|26325096\|dbj\|BAC26302.1\| unnamed protein product [Mus musculus]	663.0	[0..22]	[869..28]
gi\|7959211 - gi\|7959211\|dbj\|BAA95999.1\| KIAA1475 protein [Homo sapiens]	660.0	[0..22]	[869..41]
gi\|42552443, gi\|... - gi\|46122183\|ref\|XP_385645.1\| hypothetical protein FG05469.1 [Gibberella zeae PH-1], gi\|42552443\|gb\|E...	660.0	[0..27]	[898..11]
gi\|157817523, gi... - gi\|27731999\|ref\|XP_230471.1\| PREDICTED: similar to Vacuolar protein sorting 18 [Rattus norvegicus], ...	659.0	[0..22]	[869..28]
gi\|38110669, gi\|... - gi\|39976845\|ref\|XP_369810.1\| hypothetical protein MG06325.4 [Magnaporthe grisea 70-15], gb\|EAA56354....	658.0	[0..22]	[897..11]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLAEDWIDP NSSEDSDIQE DAELEYTADN PEKEQRGVFS LEKVQLQFPV SIRCLAVENN  60
   61 ILVMALTSDK LMIVDLERPE DIIDIELPKK VLALGLTYKI FLDPSGHYIF VTTTAGDNCL 120
  121 FTPSHQGRVL TKLKGHTVEA VQWNLNGGNI LELLIASKSG VLLELVLTLD SANLKRIEKS 180
  181 INTLYSFPFM ESPMGILKNI QDDSMTIVTN KRILRFEPKT SRGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.0
Match:	1bpoA
Description:	Clathrin heavy-chain linker domain; Clathrin heavy-chain terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [225-827]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQLYFSPAFQ GSMKEILSFS EEETAQCFSY SPFPKNLAEP YTLALKTSKR IIYLDIMNPV  60
   61 NPDIQDYEFN ESPKLSVPTV EMNMILTSFH LAFLDLDTLY IVNRVNGKES YQQRVNLSPH 120
  121 EEILGLCCDH EKNTYWLYTT DSLHELVVNN ETREASLVFL EKGDFEKALE CANTAKVRNT 180
  181 VLVGYAEFLM EHEEYERAAT LYAETLKSVE EVALKFIELN QKDVLRLYLW KKLRSYKSTM 240
  241 KIQKSLLVNW LLELMLAKLN SLDEKERLEL FPENVMQQRQ QVQREFSTLL NQYKDEINRE 300
  301 AAYNLANNYG KEEQLLQIAT VMKDQSYIMH YWVQRENYEK ALETLNEGVS QETLIQHATA 360
  361 LLTHRPNETV SIWERQTDLD VHALIPSLLS YNQRSHVPVE ENAAIRYLRY VTGVLGCVDP 420
  421 SIHNTLFCIY ACHSSSNESY LMNYIEQQGN HPLYDMDLGI RLCLQFNCRR SAVKILVLMK 480
  481 LYSQGVELAL EADDCELAAT IANIPEEDVV LKKTLWQTIA KYMFSKKSGI KETLRFLENS 540
  541 EVLQLPELIR LLPEDIKLDD LSDNVCDELD HCMKRIEQLD FEIGQASEVA HEIQTNAENM 600
  601 RNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.69897
Match:	1xi4A
Description:	Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [828-900]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YIVLEPNESC WHCNQPLFSE PFVLFPCQHA FHRSCMLEKT YKLASEKNIL KECQLCGPSY  60
   61 AVRLINEPFS TDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	2ecnA
Description:	No description for 2ecnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits