YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC36B7.08c
Organism:	Schizosaccharomyces pombe
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC36B7.08c.

Description	E-value	Query Range	Subject Range
TSYL1_PONAB - Testis-specific Y-encoded-like protein 1 OS=Pongo abelii GN=TSPYL1 PE=2 SV=1 gi\|55732596 - gi\|55732596\|emb\|CAH92998.1\| hypothetical protein [Pongo abelii]	228.0	[0..1]	[198..230]
gi\|114609005 - gi\|114609005\|ref\|XP_001161646.1\| PREDICTED: TSPY-like 1 isoform 1 [Pan troglodytes]	228.0	[0..1]	[198..203]
gi\|51464263, gi\|... - gi\|51464263\|ref\|XP_371701.2\| PREDICTED: similar to SET protein (Phosphatase 2A inhibitor I2PP2A) (I-...	227.0	[0..2]	[198..142]
gi\|109110118 - gi\|109110118\|ref\|XP_001110539.1\| PREDICTED: similar to Protein SET (Phosphatase 2A inhibitor I2PP2A)...	226.0	[0..2]	[198..40]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAQAFENL ANLEQEFGKA EIEILKKQNE LFQPLFEQRR DILKTINNFW VVVLEAAGDE  60
   61 ISQYITPEDS VLLEKLENIY VERFNEKEPR DVRISLTFQP NEYLQDDNLT LVKEVRIKEE 120
  121 KAKDDEGLEK KITKYTSQPV DIHWKPGKSL FRKNKKLPPN FFDYFQWTGE EEDDDFDGAT 180
  181 LTIFLAEDLF PNAVKYFTEA MTEEASDEDE SVDLEEDEEE EDEEDEEGDE EKQEPPSKKS 240
  241 KKSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	2e50A
Description:	No description for 2e50A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits