YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC736.06
Organism:	Schizosaccharomyces pombe
Length:	611 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC736.06.

Description	E-value	Query Range	Subject Range
SYD_NITEU - Aspartate--tRNA ligase OS=Nitrosomonas europaea GN=aspS PE=3 SV=1 SYDND_NITEU - Aspartate--tRNA(Asp/Asn) ligase OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=aspS PE...	579.0	[0..8]	[611..8]
SYDND_NITEC - Aspartate--tRNA(Asp/Asn) ligase OS=Nitrosomonas eutropha (strain C91) GN=aspS PE=3 SV=1	576.0	[0..8]	[611..8]
SYDND_DECAR - Aspartate--tRNA(Asp/Asn) ligase OS=Dechloromonas aromatica (strain RCB) GN=aspS PE=3 SV=1	576.0	[0..8]	[610..8]
SYDND_METFK - Aspartate--tRNA(Asp/Asn) ligase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) G...	573.0	[0..9]	[606..9]
SYDND_AROAE - Aspartate--tRNA(Asp/Asn) ligase OS=Aromatoleum aromaticum (strain EbN1) GN=aspS PE=3 SV=1	572.0	[0..8]	[610..8]
SYDND_DESRM - Aspartate--tRNA(Asp/Asn) ligase OS=Desulfotomaculum reducens (strain MI-1) GN=aspS PE=3 SV=1	571.0	[0..8]	[611..17]
SYD_SHESR - Aspartate--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=aspS PE=3 SV=1	570.0	[0..1]	[611..1]
SYD_SHESA - Aspartate--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=aspS PE=3 SV=1	570.0	[0..1]	[611..1]
SO2433 - aspartyl-tRNA synthetase SYD_SHEON - Aspartate--tRNA ligase OS=Shewanella oneidensis (strain MR-1) GN=aspS PE=3 SV=1	569.0	[0..1]	[611..1]
gi\|13362044, gi\|... - gi\|15831830\|ref\|NP_310603.1\| aspartyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|25293010, gi\|... - pir\|\|H90950 aspartate tRNA synthetase [imported] - Escherichia coli (strain O157:H7, substrain RIMD... gi\|217318181, gi... - gi\|217328834\|ref\|ZP_03444915.1\| aspartyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588], gi... SYD_ECO57 - Aspartate--tRNA ligase OS=Escherichia coli O157:H7 GN=aspS PE=3 SV=1 gi\|189367330, gi... - gi\|189367330\|gb\|EDU85746.1\| aspartyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501], gi\|1687...	569.0	[0..8]	[610..8]

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Predicted Domain #1

Region A:
Residues: [1-611]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSRLPACL LPLVGTKVSI QGWLVATSRQ VSKSISFHQL RDTHGTILQL LSTDKIILQQ  60
   61 KREPLVSSTD FSQQKSTSVM RTLSSIPPES VVQVTGKLQR RPEHDRRPGN EFELHVEDVK 120
  121 LLNVAKNLQL FPGDEKPGMR IQLANRHIQL RAPKYNSYLR QRSRLAYQVH SFFNDREFCE 180
  181 VETPLLFKST PEGAREFVVP SRLNPGKFYA LPQSPQQYKQ ILMASGIGNY YQIARCFRDE 240
  241 DLRFDRQPEF TQIDLEMSFV DKPHEIMEVV EDLLVRLVSF AKGITLAKPF QHITYQHAID 300
  301 KYGSDKPDIR FELPLKNITS LLPKQDPLIS TEILVYNDLS HSLSNAESRK LCEAVGENVV 360
  361 VTSIREHSQL QTWVKKLPQL RQLPIVAEEL NQKLQIGINS IVFMTNRPKY LVSGTTPLGK 420
  421 LRLLLHELLV KKKALPELDK DLLKFVWVVD FPLFSPTEEK NQSITSTHHP FTAPHWDDVH 480
  481 LLEKKPLSVR GLHYDIVVNG IELGGGSIRI HNPDIQRFVL KDVLKLPENR YATFEHLIRV 540
  541 LSSGCPPHGG IALGFDRLAA LLTNAPGIRE VIAFPKTSSG ADLLIGSPSA IPEEMLKDYN 600
  601 VAITRQTQNR N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	162.0
Match:	1eqrA
Description:	Aspartyl-tRNA synthetase (AspRS); Prokaryotic AspRS, insert domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits