YRC Public Data Repository - Protein Structure Prediction

Protein:	cbf11
Organism:	Schizosaccharomyces pombe
Length:	613 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cbf11.

Description	E-value	Query Range	Subject Range
gi\|37665598 - gi\|37665598\|dbj\|BAC99044.1\| Su(H) [Hemicentrotus pulcherrimus]	687.0	[0..17]	[547..6]
SUH_MOUSE - Recombining binding protein suppressor of hairless OS=Mus musculus GN=Rbpj PE=1 SV=1 gi\|238153 - gi\|238153\|gb\|AAB20195.1\| J kappa recombination signal sequence binding protein; RBP-2 [Mus sp.]	585.0	[0..107]	[547..6]
gi\|109073932 - gi\|109073932\|ref\|XP_001083737.1\| PREDICTED: similar to recombining binding protein suppressor of hai...	583.0	[0..156]	[586..15]
SUH_BOVIN - Recombining binding protein suppressor of hairless OS=Bos taurus GN=RBPJ PE=2 SV=1 gi\|149702845 - gi\|149702845\|ref\|XP_001499368.1\| PREDICTED: similar to Recombination signal binding protein for immu...	581.0	[0..156]	[547..16]
gi\|73951596 - gi\|73951596\|ref\|XP_536269.2\| PREDICTED: similar to recombining binding protein suppressor of hairles...	581.0	[0..156]	[547..15]
gi\|109500651, gi... - gi\|149047201\|gb\|EDL99870.1\| recombining binding protein suppressor of hairless (Drosophila) (predict...	581.0	[0..92]	[547..2]
gi\|119613253, gi... - gi\|42560227\|ref\|NP_005340.2\| recombining binding protein suppressor of hairless isoform 1 [Homo sapi... gi\|114593389, gi... - gi\|114593391\|ref\|XP_001166354.1\| PREDICTED: recombining binding protein suppressor of hairless isofo...	580.0	[0..156]	[547..29]

Back

Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDYFAWDFA NISGSNTSGS LNLNQLNLDN INNGLHNQED GAGGRNENSE RVGSGSPGSV  60
   61 SMQVLSLFSA VNSALATLEK SEE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPSVVKDEQS IFPAVAKASN SLDELAQNII PAPSPPGFNR KRKTFDEDSS VEMIRRAISD  60
   61 HLDLLNNCCI GIANLNEDSV HKISLTR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [171-613]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGKPSQLVTV SCRHSSVIQK SYGSEKRYLC PPPMVYINGN YSSIFNQSFR TEISIMNDFG  60
   61 QCSQPISEEY TGQGCMIFRS LHISSLVAAK SKNLRLSLDM FSNVNNQLLS HLVTSSISIV 120
  121 SKPSKKGSKL KISNITLRSG SVVSLYNRIN SQTVRTKYTS IEAGQFCLRG DRWVPLRINL 180
  181 LLPDENGKLK VCDDVDNPEP IKYGSIVELV DEATGTTSDP LIIRRVEKDH IAEEDGYVNQ 240
  241 MHRIVLESAY PISNVRHLKI AEHSSLAYSN NISVRWFLGA TSAQNRNASS EAILPIEWEA 300
  301 VGNLSSNEMT RVGDSVCWTI VGISHFDCTM MLPFNQNPVP TVTDYPYIEE PPEYLESSRS 360
  361 LQFKIGGYSV GLQIWLGVHG PLSYSFTAAA DTSTMGTVTL GLSQISYDPS CAEQKYPLLF 420
  421 VIPGGIVIIG KCEILLTSSA FGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	166.0
Match:	2f8xC
Description:	No description for 2f8xC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits