YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC4A8.07c
Organism:	Schizosaccharomyces pombe
Length:	458 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4A8.07c.

Description	E-value	Query Range	Subject Range
gi\|42544498, gi\|... - gi\|46111787\|ref\|XP_382951.1\| hypothetical protein FG02775.1 [Gibberella zeae PH-1], gi\|42544498\|gb\|E...	306.0	[0..8]	[454..15]
gi\|40747138, gi\|... - gi\|67518017\|ref\|XP_658780.1\| hypothetical protein AN1176.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	303.0	[0..7]	[449..30]
gi\|198442891, gi... - gi\|34867563\|ref\|XP_217019.2\| PREDICTED: similar to Ceramide kinase (Acylsphingosine kinase) (mCERK) ...	290.0	[0..26]	[449..41]
gi\|109451616, gi... - gi\|208967689\|dbj\|BAG72490.1\| ceramide kinase [synthetic construct], gi\|109451616\|emb\|CAK54679.1\| CER... CERK - ceramide kinase	288.0	[0..33]	[449..48]
gi\|114686947 - gi\|114686947\|ref\|XP_001137835.1\| PREDICTED: ceramide kinase isoform 1 [Pan troglodytes]	288.0	[0..33]	[449..48]
gi\|109094558 - gi\|109094558\|ref\|XP_001111087.1\| PREDICTED: similar to ceramide kinase isoform a [Macaca mulatta]	285.0	[0..33]	[449..48]
CERK1_MOUSE, CEK... - Ceramide kinase OS=Mus musculus GN=Cerk PE=2 SV=1, (Q8K4Q7) Ceramide kinase (EC 2.7.1.138) (Acylsphi...	283.0	[0..26]	[449..41]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFGLTNNSI KAFEDQKLLH IHQSCVSYPS DTLICSIPVS AKNVDLNIPF KNILWVDKTG  60
   61 PNSVTLSYVS RSSKVATKCW VDFVENSDQF CEYLLDVAYK GIKR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.873	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.736	N/A	N/A	d.93.1	SH2 domain
View	Download	0.702	N/A	N/A	a.11.2	Second domain of FERM
View	Download	0.676	N/A	N/A	d.42.1	POZ domain
View	Download	0.676	N/A	N/A	d.93.1	SH2 domain
View	Download	0.666	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.646	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.563	N/A	N/A	a.11.2	Second domain of FERM
View	Download	0.547	N/A	N/A	a.118.11	Cytochrome c oxidase subunit E

Predicted Domain #2

Region A:
Residues: [105-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRRFIVFINP HGGKGKAKHI WESEAEPVFS SAHSICEVVL TRRKDHAKSI AKNLDVGSYD  60
   61 GILSVGGDGL FHEVINGLGE RDDYLEAFKL PVCMIPGGSG NAFSYNATGQ LKPALTALEI 120
  121 LKGRPTSFDL MTFEQKGKKA YSFLTANYGI IADCDIGTEN WRFMGENRAY LGFFLRLFQK 180
  181 PDWKCSIEMD VVSSDRTEIK HMYEKSKNLA PMSESSDSDK TVSTSPESHL LTFEINDLSI 240
  241 FCAGLLPYIA PDAKMFPAAS NDDGLIDVVI VYSKQFRKSL LSMFTQLDNG GFYYSKHLNY 300
  301 YKVRSFRFTP VNTGKRHYFA LDGESYPLEP FECRVAPKLG TTLSPVAGFQ LLDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	2bonA
Description:	No description for 2bonA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits