YRC Public Data Repository - Protein Structure Prediction

Protein:	atl1
Organism:	Schizosaccharomyces pombe
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atl1.

Description	E-value	Query Range	Subject Range
gi\|33152202, gi\|... - gi\|33152202\|ref\|NP_873555.1\| methylated-DNA--protein-cysteine S-methyltransferase [Haemophilus ducre...	151.0	[0..2]	[108..83]
gi\|32034034 - gi\|32034034\|ref\|ZP_00134278.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Actinobac... gi\|126097202, gi... - gi\|126208410\|ref\|YP_001053635.1\| methylated-DNA--protein-cysteine S-methyltransferase [Actinobacillu...	149.0	[0..2]	[107..84]
gi\|111143364 - gi\|111143364\|gb\|ABH06550.1\| methylated-DNA-protein cysteine S-methyltransferase [Thermoanaerobacter ...	149.0	[0..1]	[89..58]
gi\|167036637, gi... - gi\|76796157\|ref\|ZP_00778524.1\| Methylated-DNA-(protein)-cysteine S-methyltransferase [Thermoanaeroba... gi\|114845299, gi... - gi\|167039287\|ref\|YP_001662272.1\| methylated-DNA--protein-cysteine methyltransferase [Thermoanaerobac... gi\|242232317, gi... - gi\|242256119\|ref\|ZP_04801015.1\| methylated-DNA/protein-cysteine methyltransferase [Thermoanaerobacte... gi\|241903601, gi... - gi\|241903601\|ref\|ZP_04788322.1\| methylated-DNA/protein-cysteine methyltransferase [Thermoanaerobacte...	147.0	[0..1]	[89..69]
gi\|20808873, gi\|... - gi\|20808873\|ref\|NP_624044.1\| methylated DNA-protein cysteine methyltransferase [Thermoanaerobacter t... gi\|20808873 - gi\|20808873\|ref\|NP_624044.1\| Methylated DNA-protein cysteine methyltransferase [Thermoanaerobacter t...	147.0	[0..1]	[89..91]
gi\|77960030, gi\|... - gi\|77960030\|ref\|ZP_00823930.1\| COG2169: Adenosine deaminase [Yersinia mollaretii ATCC 43969], gi\|238...	145.0	[0..1]	[98..283]
gi\|13880961, gi\|... - gi\|15840768\|ref\|NP_335805.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tuber...	144.0	[0..1]	[85..79]
gi\|215410956, gi... - gi\|215410957\|ref\|ZP_03419765.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|215403161, gi... - gi\|215403161\|ref\|ZP_03415342.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... OGT_MYCTU - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium tuberculosis GN=ogt PE=1 SV=1 gi\|215430201 - gi\|215430201\|ref\|ZP_03428120.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|215426644 - gi\|215426644\|ref\|ZP_03424563.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|218753025 - gi\|218753025\|ref\|ZP_03531821.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|121637246, gi... - gi\|121637246\|ref\|YP_977469.1\| putative methylated-DNA--protein-cysteine methyltransferase ogt [Mycob... gi\|215445494 - gi\|215445494\|ref\|ZP_03432246.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|224989720, gi... - gi\|224989720\|ref\|YP_002644407.1\| putative methylated-DNA--protein-cysteine methyltransferase [Mycoba... OGT_MYCTO - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 / ... gi\|253321141, gi... - gi\|253799638\|ref\|YP_003032639.1\| methylated-DNA-protein-cysteine methyltransferase ogt [Mycobacteriu... gi\|254550324 - gi\|254550324\|ref\|ZP_05140771.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|254815123 - gi\|254815123\|ref\|ZP_05220124.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|255096099 - gi\|255096099\|ref\|ZP_05325577.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|119701175, gi... - gi\|76784875\|ref\|ZP_00772055.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Mycobacte... gi\|81254727 - gi\|81254727\|ref\|ZP_00879236.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Mycobacte... gi\|167967588, gi... - gi\|167967588\|ref\|ZP_02549865.1\| methylated-DNA-protein-cysteine methyltransferase ogt [Mycobacterium... OGT_MYCTU - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25618 ... OGT_MYCBO - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium bovis GN=ogt PE=3 SV=1 OGT_MYCBO - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2...	144.0	[0..1]	[85..71]
gi\|167422074, gi... - gi\|167422074\|ref\|ZP_02313827.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|167049709, gi... - gi\|167400856\|ref\|ZP_02306362.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|167469355 - gi\|167469355\|ref\|ZP_02334059.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|162353502, gi... - gi\|77636210\|ref\|ZP_00798286.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ... gi\|167056065, gi... - gi\|167424878\|ref\|ZP_02316631.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|229837816, gi... - gi\|229837816\|ref\|ZP_04457975.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Yersinia pe... gi\|117673479, gi... - gi\|77629295\|ref\|ZP_00791881.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ... gi\|186895605, gi... - gi\|186895605\|ref\|YP_001872717.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pseudo... gi\|229894976, gi... - gi\|229894976\|ref\|ZP_04510154.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Yersinia pe... gi\|169750716, gi... - gi\|170024182\|ref\|YP_001720687.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pseudo... gi\|229898377, gi... - gi\|229898377\|ref\|ZP_04513524.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Yersinia pe... gi\|108811922, gi... - gi\|229902223\|ref\|ZP_04517344.1\| O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Yersinia pe... gi\|165927233, gi... - gi\|165927233\|ref\|ZP_02223065.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|165938557, gi... - gi\|89104628\|ref\|ZP_01177166.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Yersinia ... gi\|166208125, gi... - gi\|166210945\|ref\|ZP_02236980.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|108807643, gi... - gi\|108807643\|ref\|YP_651559.1\| putative methylated-DNA--protein-cysteine methyltransferase [Yersinia ... gi\|165990426, gi... - gi\|166010724\|ref\|ZP_02231622.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis ... gi\|149292201, gi... - gi\|149365788\|ref\|ZP_01887823.1\| putative methylated-DNA--protein-cysteine methyltransferase [Yersini... gi\|145209842, gi... - gi\|145598146\|ref\|YP_001162222.1\| methylated-DNA--protein-cysteine methyltransferase [Yersinia pestis... gi\|21958968, gi\|... - gi\|22126019\|ref\|NP_669442.1\| O-6-alkylguanine-DNA/cysteine-protein methyltransferase [Yersinia pesti... gi\|25286148 - pir\|\|AD0280 methylated-DNA-[protein]-cysteine S-methyltransferase (EC 2.1.1.63) [imported] - Yersini... gi\|115348002, gi... - gi\|218929391\|ref\|YP_002347266.1\| putative methylated-DNA--protein-cysteine methyltransferase [Yersin... gi\|51589827, gi\|... - gi\|51596545\|ref\|YP_070736.1\| putative methylated-DNA--protein-cysteine methyltransferase [Yersinia p... Q66AB1\|Q66AB1_YERPS - Putative methylated-DNA--protein-cysteine methyltransferase - Yersinia pseudotuberculosis	144.0	[0..3]	[86..86]
OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans GN=ogt PE=3 SV=1 OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 ...	143.0	[0..2]	[86..72]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMDEFYTKV YDAVCEIPYG KVSTYGEIAR YVGMPSYARQ VGQAMKHLHP ETHVPWHRVI  60
   61 NSRGTISKRD ISAGEQRQKD RLEEEGVEIY QTSLGEYKLN LPEYMWKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.045757
Match:	1sfeA
Description:	ADA O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylated-DNA-[protein]-cysteine S-methyltransferase activity	3.81641972619245	bayes_pls_golite062009
S-methyltransferase activity	2.66007025371147	bayes_pls_golite062009
transferase activity	1.93166534470568	bayes_pls_golite062009
catalytic activity	1.90838528948382	bayes_pls_golite062009
DNA binding	1.54553435062678	bayes_pls_golite062009
nucleic acid binding	1.49720271661049	bayes_pls_golite062009
binding	1.30758209326705	bayes_pls_golite062009
transcription regulator activity	1.26332746912934	bayes_pls_golite062009
methyltransferase activity	1.14625481859451	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.13184530961695	bayes_pls_golite062009
transcription factor activity	0.99095733801135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: