YRC Public Data Repository - Protein Structure Prediction

Protein:	kap1
Organism:	Schizosaccharomyces pombe
Length:	551 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for kap1.

Description	E-value	Query Range	Subject Range
gi\|46107716, gi\|... - gi\|46107716\|ref\|XP_380917.1\| hypothetical protein FG00741.1 [Gibberella zeae PH-1], gi\|42547844\|gb\|E...	419.0	[0..34]	[537..64]
gi\|67516317, gi\|... - gi\|67516317\|ref\|XP_658044.1\| hypothetical protein AN0440.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	417.0	[0..20]	[536..78]
gi\|115390851, gi... - gi\|115390851\|ref\|XP_001212930.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	401.0	[0..5]	[536..412]
gi\|39951373, gi\|... - gi\|39951373\|ref\|XP_363403.1\| hypothetical protein MG01329.4 [Magnaporthe grisea 70-15], gb\|EAA55678....	396.0	[0..33]	[538..66]
gi\|85091385 - gi\|85091385\|ref\|XP_958876.1\| hypothetical protein NCU07383 [Neurospora crassa OR74A] gi\|32414379, gi\|... - gi\|32414379\|ref\|XP_327669.1\| hypothetical protein [Neurospora crassa], gi\|28920265\|gb\|EAA29640.1\| co...	388.0	[0..9]	[530..79]
gi\|70990718, gi\|... - gi\|70990718\|ref\|XP_750208.1\| transcriptional regulator Ngg1 [Aspergillus fumigatus Af293], gi\|668478... gi\|159130685 - gi\|159130685\|gb\|EDP55798.1\| transcriptional regulator Ngg1, putative [Aspergillus fumigatus A1163]	380.0	[0..14]	[536..101]
gi\|83767866 - gi\|83767866\|dbj\|BAE58005.1\| unnamed protein product [Aspergillus oryzae] gi\|169771075 - gi\|169771075\|ref\|XP_001820007.1\| hypothetical protein [Aspergillus oryzae RIB40]	372.0	[0..20]	[536..75]
gi\|45200958, gi\|... - gi\|45200958\|ref\|NP_986528.1\| AGL139Wp [Ashbya gossypii ATCC 10895], gi\|44985728\|gb\|AAS54352.1\| AGL13... gi\|44985728 - gi\|44985728\|gb\|AAS54352.1\| AGL139Wp [Ashbya gossypii ATCC 10895]	366.0	[0..15]	[539..29]
gi\|405594 - gi\|405594\|gb\|AAA03542.1\| alteration/deficiency in activation 3 protein [Saccharomyces cerevisiae]	362.0	[0..15]	[537..35]

Back

Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEQQNEAD SKPAVIPQCF KIENQYETFS RLSETSTPGV VPSVSTLWRL LFELQKMIEC  60
   61 EPSCVEYFRQ RKEELESHVD SEIETSKDES SVNKVEEKVE EFKEDNVEQE IKQKRSLSES 120
  121 PQESMLEKVS KKPKVSEAHN EEISPENVET IENELDLPVK GKDEQTTGLV YKNANDLLTG 180
  181 SLLSFIVDDS FSYEQKKKLL CVDSFPTSDV RSLVAGTPAT DDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [224-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHNKPNNQIS ISTFYSSLDP YFRAFNDDDI AFLKKGFDVS SSYNIPPLGE RYYDLTPEDE  60
   61 MTNLCANSIY QNLQTSAQGS LEAFNEADTV SEEVRCGPLT ERLMASLIPC YTQNDEEQKP 120
  121 SIAVGEFAET DSGSEKSKI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [363-551]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTSIDGIESG NNEYTEQPDI QESSLSICED RLRYTLKQLG ILYDGDVDWS KRQDDEISAT  60
   61 LRSLNARLKV VSDENEKMRN ALLQMLPEEM AFQEFQNVMD DLDKQIEQAY VKRNRSLKVK 120
  121 KKRIVTDKIG SSATSGSFPV IKSLMDKRSM WLEKLQPLFQ DKLTQHLGSP TSIFNDLSDH 180
  181 TTSNYSTSV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits