YRC Public Data Repository - Protein Structure Prediction

Protein:	meu10
Organism:	Schizosaccharomyces pombe
Length:	416 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for meu10.

Description	E-value	Query Range	Subject Range
gi\|45199242, gi\|... - gi\|45199242\|ref\|NP_986271.1\| AFR723Cp [Ashbya gossypii ATCC 10895], gi\|44985382\|gb\|AAS54095.1\| AFR72... gi\|44985382 - gi\|44985382\|gb\|AAS54095.1\| AFR723Cp [Ashbya gossypii ATCC 10895]	248.0	[0..25]	[410..97]
SPS22 - Protein of unknown function, redundant with Sps2p for the organization of the beta-glucan layer of t... SPS22_YEAST - Sporulation-specific protein 22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPS22 PE...	219.0	[0..21]	[396..66]
gi\|164423746, gi... - gi\|85099527\|ref\|XP_960803.1\| predicted protein, variant [Neurospora crassa OR74A], gi\|164423746\|ref\|... gi\|32421769, gi\|... - gi\|32421769\|ref\|XP_331328.1\| hypothetical protein [Neurospora crassa], gi\|28950138\|emb\|CAD70996.1\| r...	194.0	[0..21]	[360..17]
SPAC1705.03c - conserved fungal family ECM33_SCHPO - Cell wall protein ecm33 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ecm33 PE=1 SV=2	189.0	[0..9]	[367..2]
gi\|67528384, gi\|... - gi\|67528384\|ref\|XP_661994.1\| hypothetical protein AN4390.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	187.0	[0..29]	[356..24]
gi\|2388938 - gi\|2388938\|emb\|CAB11673.1\| SPAC1705.03c [Schizosaccharomyces pombe]	186.0	[0..9]	[367..2]
gi\|88178272, gi\|... - gi\|88178272\|gb\|EAQ85740.1\| hypothetical protein CHGG_06993 [Chaetomium globosum CBS 148.51], gi\|1161...	184.0	[0..27]	[384..22]
gi\|50550121, gi\|... - gi\|50550121\|ref\|XP_502533.1\| YALI0D07480p [Yarrowia lipolytica], gi\|49648401\|emb\|CAG80721.1\| unnamed... gi\|49648401 - gi\|49648401\|emb\|CAG80721.1\| YALI0D07480p [Yarrowia lipolytica]	184.0	[0..31]	[356..35]

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Predicted Domain #1

Region A:
Residues: [1-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSSRFYLF TSFTAWSVVI AGATPAVCGA PEYIIETQND LDVLSNCQVV NGSIIMNTSS  60
   61 ATSLNFNRIE TITGDLIIRN NNYLASVALT SISSVGGELR FEKLTRLASV YAPQLANVGQ 120
  121 LTMRILPNLQ GIRFDKGIKK AHKLTIEDTQ LSTLAGISLN TTDTMVIVNN NYLREVDMPY 180
  181 LESVESKFYV SYNAREISVT LPRLKTVGDM TIQRVAHLQL SNLEEVKGFL GFLNSTLQDI 240
  241 SCPNITRIGQ SLFFIGNQEL TSLNFKQLES IGGTFMIANS AALAQIKGYD KLKTVAGSID 300
  301 FTGNFSSVEL PKLRDVKGGL NIQTT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	2omtA
Description:	No description for 2omtA was found.

Predicted Domain #2

Region A:
Residues: [326-416]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSDFTCPFRQ SDGIIKGKSF VCRGSVDNPR QSKESSFDDD DFDELLGNGT IKGSKNSTSP  60
   61 VKQSGAAKVD SRPFRLVTFF LVLVSGFAHL L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits