YRC Public Data Repository - Protein Structure Prediction

Protein:	isa2
Organism:	Schizosaccharomyces pombe
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for isa2.

Description	E-value	Query Range	Subject Range
ERPA_BORA1 - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella avium (strain 197N) GN=erpA PE=3 S...	176.0	[0..91]	[204..11]
ERPA_POLSQ - Putative iron-sulfur cluster insertion protein ErpA OS=Polynucleobacter necessarius subsp. asymbioti...	174.0	[0..80]	[203..1]
ERPA_BORPA - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella parapertussis GN=erpA PE=3 SV=1 ERPA_BORPA - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella parapertussis (strain 12822 / ATCC... ERPA_BORPE - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella pertussis GN=erpA PE=3 SV=1 ERPA_BORBR - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella bronchiseptica (strain ATCC BAA-58... ERPA_BORBR - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella bronchiseptica GN=erpA PE=3 SV=1 ERPA_BORPE - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella pertussis (strain Tohama I / ATCC ...	174.0	[0..91]	[204..11]
ISCAP_ARATH - Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2	174.0	[0..24]	[202..9]
ERPA2_METCA - Iron-sulfur cluster insertion protein erpA 2 OS=Methylococcus capsulatus GN=erpA2 PE=3 SV=1 ERPA2_METCA - Iron-sulfur cluster insertion protein ErpA 2 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB ...	174.0	[0..74]	[204..1]
ERPA_SHEB8 - Iron-sulfur cluster insertion protein ErpA OS=Shewanella baltica (strain OS185) GN=erpA PE=3 SV=1 ERPA_SHEB2 - Iron-sulfur cluster insertion protein ErpA OS=Shewanella baltica (strain OS223) GN=erpA PE=3 SV=1 ERPA_SHEB9 - Iron-sulfur cluster insertion protein ErpA OS=Shewanella baltica (strain OS195) GN=erpA PE=3 SV=1 ERPA_SHEB5 - Iron-sulfur cluster insertion protein ErpA OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=e...	174.0	[0..88]	[204..1]
gi\|111611416, gi... - gi\|111611416\|ref\|ZP_01398505.1\| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2], ...	174.0	[0..36]	[203..19]
ERPA_SHESA - Iron-sulfur cluster insertion protein ErpA OS=Shewanella sp. (strain ANA-3) GN=erpA PE=3 SV=1 ERPA_SHESM - Iron-sulfur cluster insertion protein ErpA OS=Shewanella sp. (strain MR-4) GN=erpA PE=3 SV=1 ERPA_SHESR - Iron-sulfur cluster insertion protein ErpA OS=Shewanella sp. (strain MR-7) GN=erpA PE=3 SV=1	173.0	[0..88]	[204..1]
ERPA_DECAR - Putative iron-sulfur cluster insertion protein ErpA OS=Dechloromonas aromatica (strain RCB) GN=erpA ...	173.0	[0..87]	[203..2]
gi\|86145585, gi\|... - gi\|86145585\|ref\|ZP_01063915.1\| HesB family protein [Vibrio sp. MED222], gi\|85836556\|gb\|EAQ54682.1\| H... gi\|218321650, gi... - gi\|218708631\|ref\|YP_002416252.1\| HesB family protein [Vibrio splendidus LGP32], gi\|218321650\|emb\|CAV... gi\|84377461, gi\|... - gi\|84387616\|ref\|ZP_00990633.1\| HesB family protein [Vibrio splendidus 12B01], gi\|84377461\|gb\|EAP9432...	173.0	[0..96]	[204..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMKSRVNLL FKGPFFFRER CFQTLLNPVI AIRQLSHGSL RNSRSCRIDA KSNTLTKEIF  60
   61 PKINNEFKIK NRFYSSKLAN DQFTLQEQCD EKGIPF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILYVKDSAKK QLEKIAERKP EENSVLRVTV DGGGCHGYQV SFRMDNKIGN ADTVFVRGKA  60
   61 RVVADNISLP LISGSEIEYT NELIGSSFQL LNNPRAKTSC GCNVSFDVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	2apnA
Description:	No description for 2apnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits