YRC Public Data Repository - Protein Structure Prediction

Protein:	isa2
Organism:	Schizosaccharomyces pombe
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for isa2.

Description	E-value	Query Range	Subject Range
ERPA_BORA1 - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella avium (strain 197N) GN=erpA PE=3 S...	176.0	[0..91]	[204..11]
ERPA_POLSQ - Putative iron-sulfur cluster insertion protein ErpA OS=Polynucleobacter necessarius subsp. asymbioti...	174.0	[0..80]	[203..1]
ERPA_BORPA - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella parapertussis GN=erpA PE=3 SV=1 ERPA_BORPA - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella parapertussis (strain 12822 / ATCC... ERPA_BORPE - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella pertussis GN=erpA PE=3 SV=1 ERPA_BORBR - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella bronchiseptica (strain ATCC BAA-58... ERPA_BORBR - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella bronchiseptica GN=erpA PE=3 SV=1 ERPA_BORPE - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella pertussis (strain Tohama I / ATCC ...	174.0	[0..91]	[204..11]
ISCAP_ARATH - Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2	174.0	[0..24]	[202..9]
ERPA2_METCA - Iron-sulfur cluster insertion protein erpA 2 OS=Methylococcus capsulatus GN=erpA2 PE=3 SV=1 ERPA2_METCA - Iron-sulfur cluster insertion protein ErpA 2 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB ...	174.0	[0..74]	[204..1]
ERPA_SHEB8 - Iron-sulfur cluster insertion protein ErpA OS=Shewanella baltica (strain OS185) GN=erpA PE=3 SV=1 ERPA_SHEB2 - Iron-sulfur cluster insertion protein ErpA OS=Shewanella baltica (strain OS223) GN=erpA PE=3 SV=1 ERPA_SHEB9 - Iron-sulfur cluster insertion protein ErpA OS=Shewanella baltica (strain OS195) GN=erpA PE=3 SV=1 ERPA_SHEB5 - Iron-sulfur cluster insertion protein ErpA OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=e...	174.0	[0..88]	[204..1]
gi\|111611416, gi... - gi\|111611416\|ref\|ZP_01398505.1\| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2], ...	174.0	[0..36]	[203..19]
ERPA_SHESA - Iron-sulfur cluster insertion protein ErpA OS=Shewanella sp. (strain ANA-3) GN=erpA PE=3 SV=1 ERPA_SHESM - Iron-sulfur cluster insertion protein ErpA OS=Shewanella sp. (strain MR-4) GN=erpA PE=3 SV=1 ERPA_SHESR - Iron-sulfur cluster insertion protein ErpA OS=Shewanella sp. (strain MR-7) GN=erpA PE=3 SV=1	173.0	[0..88]	[204..1]
ERPA_DECAR - Putative iron-sulfur cluster insertion protein ErpA OS=Dechloromonas aromatica (strain RCB) GN=erpA ...	173.0	[0..87]	[203..2]
gi\|86145585, gi\|... - gi\|86145585\|ref\|ZP_01063915.1\| HesB family protein [Vibrio sp. MED222], gi\|85836556\|gb\|EAQ54682.1\| H... gi\|218321650, gi... - gi\|218708631\|ref\|YP_002416252.1\| HesB family protein [Vibrio splendidus LGP32], gi\|218321650\|emb\|CAV... gi\|84377461, gi\|... - gi\|84387616\|ref\|ZP_00990633.1\| HesB family protein [Vibrio splendidus 12B01], gi\|84377461\|gb\|EAP9432...	173.0	[0..96]	[204..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMKSRVNLL FKGPFFFRER CFQTLLNPVI AIRQLSHGSL RNSRSCRIDA KSNTLTKEIF  60
   61 PKINNEFKIK NRFYSSKLAN DQFTLQEQCD EKGIPF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.602	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.536	d.58.3	Protease propeptides/inhibitors
View	Download	0.535	d.58.3	Protease propeptides/inhibitors
View	Download	0.515	d.58.48	MTH1187-like
View	Download	0.498	d.58.48	MTH1187-like
View	Download	0.495	d.58.4	Dimeric alpha+beta barrel
View	Download	0.490	d.58.4	Dimeric alpha+beta barrel
View	Download	0.488	c.47.1	Thioredoxin-like
View	Download	0.464	c.47.1	Thioredoxin-like
View	Download	0.433	d.68.6	DNA-binding protein Sso10b (AlbA)

Predicted Domain #2

Region A:
Residues: [97-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILYVKDSAKK QLEKIAERKP EENSVLRVTV DGGGCHGYQV SFRMDNKIGN ADTVFVRGKA  60
   61 RVVADNISLP LISGSEIEYT NELIGSSFQL LNNPRAKTSC GCNVSFDVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	2apnA
Description:	No description for 2apnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits