YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1289.13c
Organism:	Schizosaccharomyces pombe
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1289.13c.

Description	E-value	Query Range	Subject Range
GMA12_SCHPO - Alpha-1,2-galactosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gma12 PE=1... gma12 - alpha-1,2-galactosyltransferase Gma12	484.0	[0..1]	[373..1]
XXT5_ARATH - Probable xyloglucan 6-xylosyltransferase 5 OS=Arabidopsis thaliana GN=XXT5 PE=1 SV=1	339.0	[0..5]	[333..51]
gi\|39975379, gi\|... - gi\|39975379\|ref\|XP_369080.1\| hypothetical protein MGG_00164 [Magnaporthe grisea 70-15], gb\|EAA48506....	331.0	[0..102]	[367..169]
gi\|207346534 - gi\|207346534\|gb\|EDZ73006.1\| YDR245Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404806 - gi\|190404806\|gb\|EDV08073.1\| galactosyltransferase [Saccharomyces cerevisiae RM11-1a] MNN10 - Subunit of a Golgi mannosyltransferase complex also containing Anp1p, Mnn9p, Mnn11p, and Hoc1p that ... MNN10_YEAST - Probable alpha-1,6-mannosyltransferase MNN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...	329.0	[0..89]	[362..108]
gi\|40644059 - gi\|40644059\|emb\|CAE00652.1\| golgi mannosyltransferase complex subunit [Kluyveromyces lactis]	320.0	[0..101]	[362..58]
gi\|50305863, gi\|... - gi\|50305863\|ref\|XP_452892.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642025\|emb\|CAH0174... gi\|49642025 - gi\|49642025\|emb\|CAH01743.1\| KLLA0C15477p [Kluyveromyces lactis]	319.0	[0..101]	[362..58]
gi\|44985047 - gi\|44985047\|gb\|AAS53825.1\| AFR454Wp [Ashbya gossypii ATCC 10895] gi\|45198972, gi\|... - gi\|45198972\|ref\|NP_986001.1\| AFR454Wp [Ashbya gossypii ATCC 10895], gi\|44985047\|gb\|AAS53825.1\| AFR45...	317.0	[0..100]	[360..60]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWYSYVIPA VILSIIAISG VWWNATLGTR LDQKVQLFLN EHSSILNAVY ETTTIVYTEP  60
   61 LHTSVSETIT STSFVTETTT VTPTVTATAQ ELSTLNP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPENSKIVLL MGSNAQNDPS SPLNPYIRTI IKNRRDYAER HGFKFEFLDL DEYKPSIGDK  60
   61 PAPWAKIPMI KNVIRKYPDA EWVWWLDHDA LIMNRDLNLV DHILKHEKLN SLLLRDTEYF 120
  121 SGFGIDSEGF RTPKNQDPDD IHFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2p6wA
Description:	No description for 2p6wA was found.

Predicted Domain #3

Region A:
Residues: [242-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAQDFNGINA GSFLIRNSEV GTWMLDFWNE PLYKEHNGVF VEQQALSHMI YSHPIVHKHV  60
   61 GLVTLRSINA YDSSDPAWGY EDGDLCVHFA GCFVFQTCAQ NFEKYGKIIT EKQGHDWFDP 120
  121 SEKEYIEQRL FPQP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.89
Match:	2p6wA
Description:	No description for 2p6wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits