YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1289.13c
Organism:	Schizosaccharomyces pombe
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1289.13c.

Description	E-value	Query Range	Subject Range
GMA12_SCHPO - Alpha-1,2-galactosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gma12 PE=1... gma12 - alpha-1,2-galactosyltransferase Gma12	484.0	[0..1]	[373..1]
XXT5_ARATH - Probable xyloglucan 6-xylosyltransferase 5 OS=Arabidopsis thaliana GN=XXT5 PE=1 SV=1	339.0	[0..5]	[333..51]
gi\|39975379, gi\|... - gi\|39975379\|ref\|XP_369080.1\| hypothetical protein MGG_00164 [Magnaporthe grisea 70-15], gb\|EAA48506....	331.0	[0..102]	[367..169]
gi\|207346534 - gi\|207346534\|gb\|EDZ73006.1\| YDR245Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404806 - gi\|190404806\|gb\|EDV08073.1\| galactosyltransferase [Saccharomyces cerevisiae RM11-1a] MNN10 - Subunit of a Golgi mannosyltransferase complex also containing Anp1p, Mnn9p, Mnn11p, and Hoc1p that ... MNN10_YEAST - Probable alpha-1,6-mannosyltransferase MNN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...	329.0	[0..89]	[362..108]
gi\|40644059 - gi\|40644059\|emb\|CAE00652.1\| golgi mannosyltransferase complex subunit [Kluyveromyces lactis]	320.0	[0..101]	[362..58]
gi\|50305863, gi\|... - gi\|50305863\|ref\|XP_452892.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642025\|emb\|CAH0174... gi\|49642025 - gi\|49642025\|emb\|CAH01743.1\| KLLA0C15477p [Kluyveromyces lactis]	319.0	[0..101]	[362..58]
gi\|44985047 - gi\|44985047\|gb\|AAS53825.1\| AFR454Wp [Ashbya gossypii ATCC 10895] gi\|45198972, gi\|... - gi\|45198972\|ref\|NP_986001.1\| AFR454Wp [Ashbya gossypii ATCC 10895], gi\|44985047\|gb\|AAS53825.1\| AFR45...	317.0	[0..100]	[360..60]

Back

Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWYSYVIPA VILSIIAISG VWWNATLGTR LDQKVQLFLN EHSSILNAVY ETTTIVYTEP  60
   61 LHTSVSETIT STSFVTETTT VTPTVTATAQ ELSTLNP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.740	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.719	d.93.1	SH2 domain
View	Download	0.646	d.50.1	dsRNA-binding domain-like
View	Download	0.639	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.626	d.50.1	dsRNA-binding domain-like

Predicted Domain #2

Region A:
Residues: [98-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPENSKIVLL MGSNAQNDPS SPLNPYIRTI IKNRRDYAER HGFKFEFLDL DEYKPSIGDK  60
   61 PAPWAKIPMI KNVIRKYPDA EWVWWLDHDA LIMNRDLNLV DHILKHEKLN SLLLRDTEYF 120
  121 SGFGIDSEGF RTPKNQDPDD IHFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2p6wA
Description:	No description for 2p6wA was found.

Predicted Domain #3

Region A:
Residues: [242-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAQDFNGINA GSFLIRNSEV GTWMLDFWNE PLYKEHNGVF VEQQALSHMI YSHPIVHKHV  60
   61 GLVTLRSINA YDSSDPAWGY EDGDLCVHFA GCFVFQTCAQ NFEKYGKIIT EKQGHDWFDP 120
  121 SEKEYIEQRL FPQP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.89
Match:	2p6wA
Description:	No description for 2p6wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits