| Protein: | phf1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 461 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for phf1.
| Description | E-value | Query Range |
Subject Range |
|
|
199.0 | [0..162] | [456..14] |
|
|
188.0 | [0..8] | [361..109] |
|
|
179.0 | [0..47] | [361..140] |
|
|
179.0 | [0..47] | [361..175] |
|
|
178.0 | [0..47] | [361..175] |
|
|
177.0 | [0..47] | [361..175] |
|
|
177.0 | [0..47] | [361..175] |
|
Region A: Residues: [1-79] |
1 11 21 31 41 51
| | | | | |
1 MSQKNFFDEG KSYGVNDYAG FHFENGADSS LPQVSAQGVV RETDSSNFDA SPVASGSGIS 60
61 DVGPFGADFH QLQQHVQTP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [80-329] |
1 11 21 31 41 51
| | | | | |
1 YGGMTMPASS SSGATSVPPE QDPSLSVSFN RLPKSASTKT KNGRIRSSRR EDDNRIPFYD 60
61 LDVAEGAEDD LQEDFHVEGM KTKSGRKIQR PVAYNPNATA LKRKSRKVDM VTLCSVCQRG 120
121 HSPLSNRIVF CDGCNSPYHQ LCHHPPIDDA TVQDVDAEWF CMKCQYRRAK QPLETGMTAQ 180
181 DLGLSESDKK MYLSSLPTPH LADLILFCEK SYPSLPIYNP RTRELLGEIR HQLLVSSERQ 240
241 QISLQERLHA
|
| Detection Method: | |
| Confidence: | 4.045757 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [330-461] |
1 11 21 31 41 51
| | | | | |
1 KQDEAPSDEP APVPYTASYV ANSGTLYDYP TLIRLAIRNT LSPSKDEIFN WLAQNVPLLP 60
61 TFHDSASEAI RWMVNKGQLV RSGSIYQIAT VEEYPHLQPS LLPTFQRNRK VPKLVPVSFP 120
121 TDDPQNLCAT VL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.229 | 0.958 | response to heat | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.315 | 0.958 | response to heat | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.231 | 0.958 | response to heat | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.216 | 0.958 | response to heat | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.257 | 0.958 | response to heat | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
