YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC4G3.16
Organism:	Schizosaccharomyces pombe
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC4G3.16.

Description	E-value	Query Range	Subject Range
gi\|83572680, gi\|... - gi\|83589766\|ref\|YP_429775.1\| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosp...	127.0	[0..277]	[402..25]
gi\|50120065, gi\|... - gi\|50120065\|ref\|YP_049232.1\| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-am...	126.0	[0..277]	[403..24]
gi\|254226773, gi... - gi\|75818771\|ref\|ZP_00748896.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Vibrio choler...	125.0	[0..251]	[403..1]
gi\|77962943, gi\|... - gi\|77962943\|ref\|ZP_00826758.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Yersinia moll...	125.0	[0..254]	[404..1]
gi\|211939446, gi... - gi\|83754936\|pdb\|2D5N\|D Chain D, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved...	125.0	[0..283]	[403..40]
RIBD_BACSU - Riboflavin biosynthesis protein RibD OS=Bacillus subtilis GN=ribD PE=1 SV=1 gi\|221323767 - gi\|221323767\|ref\|ZP_03605061.1\| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str... gi\|34873545 - gi\|34873545\|gb\|AAQ83285.1\| RibG [Cloning vector pRFN4] gi\|221319491 - gi\|221319491\|ref\|ZP_03600785.1\| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str... RIBD_BACSU - Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain 168) GN=ribD PE=1 SV=1 gi\|221314569 - gi\|221314569\|ref\|ZP_03596374.1\| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str...	125.0	[0..283]	[403..28]
gi\|77461240, gi\|... - gi\|77461240\|ref\|YP_350747.1\| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosp...	125.0	[0..272]	[402..25]
gi\|65336267 - gi\|65336267\|gb\|AAY42396.1\| HctD [Lyngbya majuscula]	125.0	[0..1]	[241..1020]
gi\|37197787, gi\|... - gi\|37679045\|ref\|NP_933654.1\| pyrimidine reductase [Vibrio vulnificus YJ016], gi\|37197787\|dbj\|BAC9362...	125.0	[0..277]	[402..28]
gi\|88776020, gi\|... - gi\|88801234\|ref\|ZP_01116773.1\| riboflavin biosynthesis protein [Reinekea sp. MED297], gi\|88776020\|gb...	125.0	[0..250]	[404..1]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIPEKYLSS VDNVEEETQI LFALSKQKDA DLGMLDSKQE QIALTIGNKP IKVKQSLQSL  60
   61 HQSRGSTGSV LWKTSVKVVP WLLQQSWFMN SLTPKTSILE LGSGISGLAG ILLSPFVGNY 120
  121 VASDKQLYLK KIRENLDQNN ASDVEVHELD WKSTPYPKDW TFDFLDYVLF FDCIYNPHLN 180
  181 AHLVSCLASL AERYPGMQCL FAQELRDQET LVDFLERVRP YFEVDLIKME EINKTSVASS 240
  241 TNLPPANMSL FIMKPYNHEE YMLKALNEAK KCEPTDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.09691
Match:	2fytA
Description:	No description for 2fytA was found.

Predicted Domain #2

Region A:
Residues: [278-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFCVGAVIVQ NGKIVSTGYS RERPGNTHAE ECAIEKFMLK NPTDSLEGAI MYSTMEPCSK  60
   61 RLSKKVSCTD LIVKQKFSTV VLGSLEPDIF VKCEGVDLLK KAGIVVIEKL TFQDDCLREA 120
  121 VRGHPPKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2b3zA
Description:	Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits