| Protein: | rrn6 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 868 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rrn6.
| Description | E-value | Query Range |
Subject Range |
|
|
51.0 | [0..276] | [481..261] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MSTWPIDAIS KKPSVSLDYG IIGACQLLNP SGYHRAEKVE NNEWTFARYD SYTGVELVDL 60
61 DKRWDILSLN PNYKLPKLTE LPAEATNSTR KATSSSFGLS VCRYVPRNLF STLAKESQLA 120
121 SSAESIYNPH ILNTFCLGKT AP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.630 | a.1.1 | Globin-like |
| View | Download | 0.500 | d.224.1 | SufE-like |
| View | Download | 0.491 | d.224.1 | SufE-like |
| View | Download | 0.477 | a.1.1 | Globin-like |
| View | Download | 0.423 | d.224.1 | SufE-like |
| View | Download | 0.418 | d.224.1 | SufE-like |
| View | Download | 0.411 | a.1.1 | Globin-like |
| View | Download | 0.378 | a.1.1 | Globin-like |
| View | Download | 0.263 | b.29.1 | Concanavalin A-like lectins/glucanases |
| View | Download | 0.254 | c.26.2 | Adenine nucleotide alpha hydrolases-like |
| View | Download | 0.253 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.228 | b.29.1 | Concanavalin A-like lectins/glucanases |
|
Region A: Residues: [143-342] |
1 11 21 31 41 51
| | | | | |
1 SDKNRYTTTE CLACSKISNE TAENLLFLCL SSPWIFRASP TLQNTATFEE FPFYLNVSAF 60
61 EFAEDPIWKF SQPVRQLVFS NGEPSLLFAL SSCELVIFQV TYDLMFLDEP NTPGCLSAIP 120
121 LRFLYADDVY NSDSFANVSV HPTDNSFFLT TSSSGRWTIW QFLDDGYREC FGSSFKESLQ 180
181 QALCSAPTSS IAYHEEEINP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [343-510] |
1 11 21 31 41 51
| | | | | |
1 DNTIYRAKWE EYFGGVILHN AFFILHVSLG EVPDFHLLFH CSSDVRILQV VNESMPIKSE 60
61 FFILTTESVL WMDIQHPQKP LLEWKHNRKL DPTLKITVTA TFSQNIYVSV YSQMNGVVQQ 120
121 IHFSKDRALP VSGSHPFLLL NEVQVPIRSL IIQPCYFFES SEFDRQGP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [511-570] |
1 11 21 31 41 51
| | | | | |
1 FDSPFWSAII DKADGSLSLH ILCEKSSLKI YNLEELTGSS QVAMKFKTIT PSVNTSEDDS 60
61
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.730 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.689 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.600 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.592 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.552 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.527 | d.17.1 | Cystatin/monellin |
| View | Download | 0.523 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.502 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.389 | a.4.1 | Homeodomain-like |
| View | Download | 0.356 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.342 | a.74.1 | Cyclin-like |
| View | Download | 0.321 | a.4.1 | Homeodomain-like |
| View | Download | 0.316 | d.66.1 | Alpha-L RNA-binding motif |
|
Region A: Residues: [571-868] |
1 11 21 31 41 51
| | | | | |
1 ANDQEIISTP NSDFQQLSLS RLYHVLCSNR NKKNTITLDE FASKVPDFVE AFDSINHDVI 60
61 ITLSELYDGF PLKGTFTNVA EIISHLEGTE LSFYFPYMFG INYNNASFFY TSVDSIASLI 120
121 HRRWESNTDK SVEIPCFQSS QRRSIKNVIH YLFLSSIGVS REKIFDPSLS RKEIDSTDLL 180
181 TFIKPFYDTE GLELNEDVRN ILENWEIGKI SSTYVIGDSA VETEDPSSSQ FSDFYISQQQ 240
241 SSVLPSSQIA TVFSQEDVPN FSSLYSESSS QTIPIMSQVV SGKYGSRPSK KKKKRSGF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
