YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAPB1E7.04c
Organism:	Schizosaccharomyces pombe
Length:	1236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAPB1E7.04c.

Description	E-value	Query Range	Subject Range
gi\|39592304, gi\|... - gi\|39592304\|emb\|CAE75525.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi\|187020927\|em... gi\|157762282 - gi\|157762282\|ref\|XP_001673483.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]	443.0	[0..4]	[1236..275]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	365.0	[0..110]	[1222..454]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	364.0	[0..177]	[1202..63]
FLO9 - Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation FLO9_YEAST - Flocculation protein FLO9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLO9 PE=3 SV=2	342.0	[0..1]	[1236..1]
MUC17 - mucin 17, cell surface associated	338.0	[0..1]	[1236..1342]
gi\|28865867 - gi\|28865867\|emb\|CAD54411.1\| secreted gel-forming mucin [Mus musculus]	324.0	[0..34]	[1233..6]

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Predicted Domain #1

Region A:
Residues: [1-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLISSLLLL VYSARLALSL NLTNQTAVLG YWGSNLAGKM GDRDQKRLSS YCQNTTYDAI  60
   61 ILSSVIDFNV DGWPVYDFSN LCSDSDTFSG SELKKCPQIE TDIQVCQENG IKVLLSIGGY 120
  121 NGNFSLNNDD DGTNFAFQVW NIFGSGEDSY RPFGKAVVDG FDLEVNKGTN TAYSAFAKRM 180
  181 LEIYASDPRR KYYISAAPTC MVPDHTLTKA ISENSFDFLS IHTFNSSTGE GCSGSRNSTF 240
  241 DAWVEYAEDS AYNTNTSLFY GVVGHQNGSN GFISPKNLTR DLLNYKANST LFGGVTIWDT 300
  301 SLAAMSYDNS SETFVEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1hvqA
Description:	CRYSTAL STRUCTURES OF HEVAMINE, A PLANT DEFENCE PROTEIN WITH CHITINASE AND LYSOZYME ACTIVITY, AND ITS COMPLEX WITH AN INHIBITOR
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chitinase activity	3.75203266278127	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	3.1190602686215	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	2.98773241907716	bayes_pls_golite062009
catalytic activity	2.22613067995402	bayes_pls_golite062009
hydrolase activity	1.97740088175981	bayes_pls_golite062009
glucosidase activity	0.58717079348538	bayes_pls_golite062009
hexosaminidase activity	0.16438321606077	bayes_pls_golite062009
amylase activity	0.0914002140078796	bayes_pls_golite062009
alpha-amylase activity	0.0521244165288097	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [318-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHKILDTKSK HSSSKSSHDS SQGLESTSSI ALNPTSSISS TSSSSSTSSA ISTISQDHTK  60
   61 TVTSVSDEPT TIT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [391-439]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASGATSVTTT TKTDFDTVTT TIVSTSTLIS ASDSTSIIVS SYVSTVTQP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [440-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASTRVQTTTV SSISTSVKQP TASVASSSVS VPSSSSVQPQ SSTPISSSSS ASSPQSTLST  60
   61 SSEVVSEVSS TLLSGSSAIP STSSSTPSSS IISSPMTSVL SSSSSIPTSS SSDFSSSITT 120
  121 ISSGISSSSI PSTFS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [575-676]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSSILSSST SSPSSTSLSI SSSSTSSTFS SASTSSPSSI SSSISSSSTI LSSPTPSTSS  60
   61 LMISSSSIIS GSSSILSSSI STIPISSSLS TYSSSVIPSS ST

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [677-869]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVSSSSSLIV SSSPVASSSS SPIPSSSSLV STYSASLSNI THSSLSLTAM SSSSAIPTSV  60
   61 NSSTLITASS SNTLLSSITS SSAIVSSTTV SNISSNLPSA TASSQSQLTN SSTLATSLYL 120
  121 SSSSSRTIST SSTNEYNTSF HAPTVSSTTS SSSTTSLAAN KGVNSNSITS LNLESTSSVT 180
  181 STAYTTDSVT STT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [870-1090]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALTSQGPSSS VVSSSLSSTT SLSTSIPVTS SVAPAVTSTG SETSSVVGSG TDSATSSSWT  60
   61 AETSSSAITS SVAASVTPTS SSSASSWSSS SEVDPSTAAS ATGSSTSSIA TASVSGSSTS 120
  121 SVATASATDS STSSIAAASV TGSSTSSVAT ASVTDSSTSS VATASATDSS TSSIAVASVT 180
  181 GSSTSSVATA SATDSSTSSV ATASITGSLS SSIATASVTG S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [1091-1236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTSSVTAVSS TSSVEGTASS TIAAAASAAT LSSDAASGSS TVTSSATASS SSSAATTADS  60
   61 SVTTDTPSND FNANVDTAGL WYVSALSSYS VPAGFAWTTI DGFSVVMPSA NAYKKRSLPI 120
  121 KATANPALNG AGTWKTIHTS ATTTAA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.36
Match:	1h1kI
Description:	THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: