YRC Public Data Repository - Protein Structure Prediction

Protein:	rsv2
Organism:	Schizosaccharomyces pombe
Length:	637 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsv2.

Description	E-value	Query Range	Subject Range
gi\|76687658 - gi\|76687658\|ref\|XP_875883.1\| PREDICTED: similar to Zinc finger protein Kr18 (HKr18) [Bos taurus]	376.0	[0..267]	[636..335]
gi\|114603786 - gi\|114603786\|ref\|XP_518146.2\| PREDICTED: hypothetical protein [Pan troglodytes]	366.0	[0..261]	[634..237]
ZNF254 - zinc finger protein 254 h0012759 - null	365.0	[0..267]	[636..246]
gi\|109129216 - gi\|109129216\|ref\|XP_001099486.1\| PREDICTED: similar to zinc finger protein 23 [Macaca mulatta]	364.0	[0..260]	[636..332]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTNNTYAR SISSNGNDNF PTPDWQFNGS QLQQNRKSKM NGRSVTNVFP NAFSDAEFEQ  60
   61 ISMPELNLKR FNPTTLEENN SDLSDMSSWD YMMNVPIRVY NDADTMDPFS LDTIPDSSMD 120
  121 MPFDPLASDY GNAANFPSVP SSLGSNHQFI TTPPVNGSNE PTSAQTNHII TANSSPSGNA 180
  181 GSNASASMSV PPPLTPSAST INDQPFSNSF DLPSQVIADG TGAISDINGN PFPMNSPPLD 240
  241 MEPLPSISMD ASDSVSEQLV KDASLP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [267-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGPFSTDYLE NGSDLKRSLG HNQKSDRVSK DVSPQHQANP STLNNPLKTQ NFDSSKNLYT  60
   61 DNKDSSLVSP TGLQSRMEQN PEVRAHPMKD SATSTALRRS HALGAAADSL LPQENSAQIY 120
  121 DGKDVSMVND NMH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [400-637]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDVRQDSFNK ESIKQRIPSL SPPITRSYNA KHRPSLVLGT SVNPHSLSPS QPPVVVPSNT  60
   61 TISSSPPLTS PVKTSANIPN LLPTSELDSS NAPHSQSAAT HDLNDVKSYY NTRSSHSVVP 120
  121 NPTNQKVSIT GAAADGPNGS APVDTTPTNS STTATGAQRK RRKFKFGKQI GPVRCTLQNR 180
  181 VTGEICNTVF SRTYDLIRHQ DTIHAKTRPV FRCEICGDQR HFSRHDALVR HLRVKHGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	2i13A
Description:	No description for 2i13A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits