YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAPB1A10.02
Organism:	Schizosaccharomyces pombe
Length:	336 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAPB1A10.02.

Description	E-value	Query Range	Subject Range
gi\|45187961, gi\|... - gi\|45187961\|ref\|NP_984184.1\| ADR088Cp [Ashbya gossypii ATCC 10895], gi\|44982745\|gb\|AAS52008.1\| ADR08... gi\|44982745 - gi\|44982745\|gb\|AAS52008.1\| ADR088Cp [Ashbya gossypii ATCC 10895]	100.0	[0..6]	[90..27]
SCM3 - Nonhistone component of centromeric chromatin that binds stoichiometrically to CenH3-H4 histones, re...	99.0	[0..25]	[88..102]
gi\|49087430, gi\|... - gi\|67522114\|ref\|XP_659118.1\| hypothetical protein AN1514.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	95.0	[0..37]	[93..26]
gi\|46107590, gi\|... - gi\|46107590\|ref\|XP_380854.1\| hypothetical protein FG00678.1 [Gibberella zeae PH-1], gi\|42544632\|gb\|E...	94.0	[0..41]	[94..47]
gi\|49526726 - gi\|49526726\|emb\|CAG60353.1\| unnamed protein product [Candida glabrata] gi\|49526726, gi\|... - gi\|50289969\|ref\|XP_447416.1\| hypothetical protein CAGL0I03850g [Candida glabrata CBS138], gi\|4952672...	91.0	[0..25]	[90..76]
gi\|66844948, gi\|... - gi\|70983590\|ref\|XP_747322.1\| Myb-like DNA-binding domain protein [Aspergillus fumigatus Af293], gi\|6...	91.0	[0..37]	[93..23]
gi\|49644448, gi\|... - gi\|50310585\|ref\|XP_455312.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644448\|emb\|CAG9802... gi\|49644448 - gi\|49644448\|emb\|CAG98020.1\| KLLA0F05115p [Kluyveromyces lactis]	91.0	[0..25]	[94..49]
gi\|114197098, gi... - gi\|115491221\|ref\|XP_001210238.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114197098\|gb\|EA...	83.0	[0..37]	[93..24]
gi\|85116033 - gi\|85116033\|ref\|XP_964982.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32420231, gi\|... - gi\|32420231\|ref\|XP_330559.1\| hypothetical protein [Neurospora crassa], gi\|28926781\|gb\|EAA35746.1\| hy...	81.0	[0..48]	[90..52]

Back

Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCNRQPKAVD LPPNYSCPHL LSFQSVEFNT NPTACDDVFC KRIESEKKYN DFLESLFKKY  60
   61 GRDTSDIADE VDLATGEIIV NNGHLEALKT KDDIWDPTF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.468	0.838	chromosome segregation	a.4.5	"Winged helix" DNA-binding domain

Predicted Domain #2

Region A:
Residues: [100-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNLEISASNG YEKKLDSSIG NPGEKAVSPV HIEDFQSPQI YKFKNLSLRD EMVSDCVFAD  60
   61 EVPLASLFVE NVCNETIPSQ SCVRLKINDK TRKVDASALE KKSCLLPNSS GTLTDQRGLD 120
  121 TIKHKSIEQN EILHVISDTL SSPRRRNPLL SSPKTPLRRS FSKSKVRNSN STKRRNFISL 180
  181 ISMISPRPNL STHHFNLGFQ PLSQQTSFSG SSTQNPHSSS TCKKAFCFQC ISESKKC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits