YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC776.06c
Organism:	Schizosaccharomyces pombe
Length:	598 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC776.06c.

Description	E-value	Query Range	Subject Range
gi\|145010396, gi... - gi\|39939844\|ref\|XP_359459.1\| hypothetical protein MGG_05318 [Magnaporthe grisea 70-15], gb\|EAA52626....	618.0	[0..3]	[596..134]
gi\|30421149 - gi\|30421149\|gb\|AAP31022.1\| MesA [Emericella nidulans]	614.0	[0..3]	[596..80]
gi\|49084408, gi\|... - gi\|67515973\|ref\|XP_657872.1\| hypothetical protein AN0268.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	607.0	[0..3]	[596..80]
gi\|115388371, gi... - gi\|115388371\|ref\|XP_001211691.1\| hypothetical protein ATEG_02513 [Aspergillus terreus NIH2624], gi\|1...	566.0	[0..3]	[596..73]
gi\|83765660 - gi\|83765660\|dbj\|BAE55803.1\| unnamed protein product [Aspergillus oryzae] gi\|169766668 - gi\|169766668\|ref\|XP_001817805.1\| hypothetical protein [Aspergillus oryzae RIB40]	536.0	[0..3]	[596..81]
gi\|70990386, gi\|... - gi\|70990386\|ref\|XP_750042.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668476...	503.0	[0..3]	[596..82]
gi\|90304132, gi\|... - gi\|90304132\|gb\|EAS33763.1\| hypothetical protein CIMG_04787 [Coccidioides immitis RS], gi\|119189479\|r...	498.0	[0..1]	[595..89]
gi\|85079677 - gi\|85079677\|ref\|XP_956395.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917458, gi\|... - gi\|32403290\|ref\|XP_322258.1\| hypothetical protein [Neurospora crassa], gi\|28917458\|gb\|EAA27159.1\| hy...	494.0	[0..81]	[596..241]
gi\|116191793, gi... - gi\|88181527\|gb\|EAQ88995.1\| hypothetical protein CHGG_05614 [Chaetomium globosum CBS 148.51], gi\|1161...	481.0	[0..81]	[596..320]
gi\|111071029, gi... - gi\|169595822\|ref\|XP_001791335.1\| hypothetical protein SNOG_00654 [Phaeosphaeria nodorum SN15], gi\|11...	465.0	[0..3]	[595..111]

Back

Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIDYLLTAI FDPDRGPVLQ YQCPENGEAS DLHFLAELML PDRVHERRED WSLFFIHFSK  60
   61 KSNVFSLFSN VDDINFEPSD SNMYYVLNTI RAKRVEGTRR GGSVFAMAIC TTFPHVHALK 120
  121 PLLDTAWEIF DSSPSLKTLS MLHKSFNLHN FQSFYQKLSL DSSLILALNN FWSFFNLYLT 180
  181 NSPHIMN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIINKDIDNI PKPGSELIEL SRDSYNSQAT FCLSAESQER YVTCVIPSIH IPECVGEVSI  60
   61 SNLINTFIDG PSPFMNTDIS ADINPINVLI TALLISKKVL FLTKTSSASV LADFVLSSCA 120
  121 LVSGATGLLQ GLTRITFPYI DLSNVESLVK LPGYLAGVMN PAFTHHADWW DVLCDIDNQT 180
  181 IQVSSNLF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [376-598]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDATTTMDTK SLFNNTSPFT PISKDNQDDE IFIKDLRKFL KADDKETLVR WRVRLYIQSF  60
   61 IRKATSYEAL FLESSPLNPY YKDYKFKGFG WSWDNDDEKV NELLYLAPKF EAWRQASTYK 120
  121 DYCYRLHCAS TPVLRCMDIQ FHLDRLRNSS LSTTDAAEIF LALESHIRTE EDVNYLLSNC 180
  181 PLHSGGLSVI AFGLYHISDK VRKAVSKLLN RIETHKVNFL FHC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits