YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC418.02
Organism:	Schizosaccharomyces pombe
Length:	695 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC418.02.

Description	E-value	Query Range	Subject Range
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	396.0	[0..1]	[695..104]
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	394.0	[0..3]	[662..7]
gi\|118385554 - gi\|118385554\|ref\|XP_001025906.1\| TPR Domain containing protein [Tetrahymena thermophila] gi\|89307673, gi\|... - gi\|89307673\|gb\|EAS05661.1\| TPR Domain containing protein [Tetrahymena thermophila SB210], gi\|1183855...	378.0	[0..1]	[688..365]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	356.0	[0..1]	[613..462]
gi\|21228822, gi\|... - gi\|21228822\|ref\|NP_634744.1\| hypothetical protein MM_2720 [Methanosarcina mazei Go1], gi\|20907343\|gb...	340.0	[0..4]	[693..296]
gi\|126179259, gi... - gi\|126179259\|ref\|YP_001047224.1\| TPR repeat-containing protein [Methanoculleus marisnigri JR1], gi\|1...	334.0	[0..1]	[682..415]

Back

Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLSEKEAF LFDRSIDQFE KGQYSKSLKT IQSVLKKKPK HPDSVALLGL NLCKLHDSRS  60
   61 ALLKCGYASS ID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2fo7A
Description:	Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [73-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKSQFCWHAL AIVYRETKDY NNSLKCYQNA LAISPNNESL WYDAAYLQAQ LGLYQPLFDN  60
   61 WNRLLQLDSS NLEYRLCFTL SAFLSGNYKE SLEQIQYLIS SCNLSPLVVS RLISFLPRIC 120
  121 EHIENGSQTV LEILLMNQNS FLNNFNFEHI KADFAFRQKN YEESIYLYAR LLIKFPNRLD 180
  181 YSEKYLNSLW NFYKSGGLAL DLLLKRTDSL IKTFSEILQT GISVLIFLLS KNLDYDFCLN 240
  241 HLISYSMHHF IPSFISLLKI PLKTNDAFSK KLITMLSNFR EGDSAKNIPT HKLWCTYCLC 300
  301 LAHYKLGDYE ESNYWLNLAI DHTPTYPELF LAKAKIFLCM GEIEEALCSF KRSVELDKSD 360
  361 RALASKYAKY LIRMDRNEEA YIVLSKFSRF RFGGVCNYLA ETECVWFLVE DGESLLRQKL 420
  421 YGLALKRFHS IYQIYKKWSF LKFDYFTQCA EDGEFQEYVE LVEW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	2gw1A
Description:	No description for 2gw1A was found.

Predicted Domain #3

Region A:
Residues: [537-695]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDNLWSSTDY LRATLGALTI YLLLFESKFN MYGNKAEEIS HMSEVEQIAY AREDNKKIMK  60
   61 LQKIEEDKIK SYIPSESEEP LVIDEDYFGH KLLITDDPLT EAMRFLQPIC WHKIKGWGFL 120
  121 KILSSKLYKL KGIIFCYYAL TNNIEGLHQK ANSLETSVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	2j9qA
Description:	No description for 2j9qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits