YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC25B8.04c
Organism:	Schizosaccharomyces pombe
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC25B8.04c.

Description	E-value	Query Range	Subject Range
gi\|85084266 - gi\|85084266\|ref\|XP_957281.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32403736, gi\|... - gi\|32403736\|ref\|XP_322481.1\| hypothetical protein [Neurospora crassa], gi\|28918370\|gb\|EAA28045.1\| hy...	587.0	[0..9]	[368..107]
gi\|115385388, gi... - gi\|115385388\|ref\|XP_001209241.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	586.0	[0..13]	[373..1319]
gi\|38110823, gi\|... - gi\|39977111\|ref\|XP_369943.1\| hypothetical protein MGG_06458 [Magnaporthe grisea 70-15], gb\|EAA56487....	577.0	[0..11]	[378..101]
gi\|46125733, gi\|... - gi\|46125733\|ref\|XP_387420.1\| hypothetical protein FG07244.1 [Gibberella zeae PH-1], gi\|42554999\|gb\|E...	572.0	[0..14]	[368..72]
gi\|67904156, gi\|... - gi\|67904156\|ref\|XP_682334.1\| hypothetical protein AN9065.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	566.0	[0..13]	[373..89]
gi\|70982314, gi\|... - gi\|70982314\|ref\|XP_746685.1\| mRNA processing protein (Mss51), putative [Aspergillus fumigatus Af293]...	562.0	[0..13]	[369..105]
gi\|207342963 - gi\|207342963\|gb\|EDZ70571.1\| YLR203Cp-like protein [Saccharomyces cerevisiae AWRI1631] MSS51 - Specific translational activator for the mitochondrial COX1 mRNA; loosely associated with the matrix... gi\|190405269 - gi\|190405269\|gb\|EDV08536.1\| protein MSS51 [Saccharomyces cerevisiae RM11-1a] gi\|151941044 - gi\|151941044\|gb\|EDN59424.1\| mitochondrial splicing suppressor [Saccharomyces cerevisiae YJM789] MSS51_YEAST - Protein MSS51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSS51 PE=1 ...	557.0	[0..1]	[374..37]
gi\|44981254, gi\|... - gi\|45185536\|ref\|NP_983252.1\| ACL152Wp [Ashbya gossypii ATCC 10895], gi\|44981254\|gb\|AAS51076.1\| ACL15... gi\|44981254 - gi\|44981254\|gb\|AAS51076.1\| ACL152Wp [Ashbya gossypii ATCC 10895]	554.0	[0..1]	[375..32]
gi\|169782108 - gi\|169782108\|ref\|XP_001825517.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83774259 - gi\|83774259\|dbj\|BAE64384.1\| unnamed protein product [Aspergillus oryzae]	552.0	[0..13]	[369..105]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLKNLFKK KSPTHELFHP LSRSPLTALR RRSEHIKQVY RCPISGKSVE YECPESGFPT  60
   61 HCNRTHWEQD KIHQSLIPKL RQINEDYHDL ARPNPLPELL KLPGPMEEDE VVSLLSWDSF 120
  121 FYTRDFPKFQ SSRTARHITS LLT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.42
Match:	2d8qA
Description:	No description for 2d8qA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.61453871150569	bayes_pls_golite062009
protein binding	1.5709406243849	bayes_pls_golite062009
transcription regulator activity	1.48028380835426	bayes_pls_golite062009
nucleic acid binding	1.28933740675944	bayes_pls_golite062009
DNA binding	1.20928788057658	bayes_pls_golite062009
transcription activator activity	1.13950949876397	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [144-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPMSIGAILH KNSPYNLKNG LTPQGLQSLT ALRYMLHRPL SAQSTDPRPT RIFVLGATKE  60
   61 CSLPPSIWLQ GLNFLFPGRL FQLHFIGPEV VVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [237-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKQPNLPSPL SLHFHQDYYH NLHRVGAFEP FDPYYDTFFL PMPLISHPLY SSSWIPTLHD  60
   61 LVSTRCSVWL TSPSSQRTTK DLEVLNNVLK DSIEPLLLPT VNKFASLGWS VDDSNLHEVY 120
  121 HANQEVFGFR ALYYNVQNVS KE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: