YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCP1E11.08
Organism:	Schizosaccharomyces pombe
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCP1E11.08.

Description	E-value	Query Range	Subject Range
gi\|62642770, gi\|... - gi\|86129704\|gb\|ABC86561.1\| TGF beta-inducible nuclear protein [Rattus norvegicus], gi\|62642770\|ref\|X... NSA2_MOUSE - Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Nsa2 PE=2 SV=1	448.0	[0..1]	[259..1]
gi\|68534732 - gi\|68534732\|gb\|AAH98657.1\| Cdk105 protein [Rattus norvegicus]	447.0	[0..1]	[259..1]
gi\|73949746 - gi\|73949746\|ref\|XP_850805.1\| PREDICTED: similar to TGF beta-inducible nuclear protein 1 (L-name rela... NSA2_BOVIN - Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=NSA2 PE=2 SV=1 gi\|149726539 - gi\|149726539\|ref\|XP_001504729.1\| PREDICTED: similar to TGF beta-inducible nuclear protein 1 [Equus c...	446.0	[0..1]	[259..1]
gi\|134025771, gi... - gi\|89272759\|emb\|CAJ83866.1\| TGF beta-inducible nuclear protein 1 [Xenopus tropicalis], gi\|62859971\|r...	446.0	[0..1]	[259..1]
ENSCJAT00000032828 - null NSA2 - NSA2 ribosome biogenesis homolog (S. cerevisiae) gi\|114599686 - gi\|114599686\|ref\|XP_517704.2\| PREDICTED: hypothetical protein [Pan troglodytes]	446.0	[0..1]	[259..1]
gi\|109077600, gi... - gi\|109077602\|ref\|XP_001103534.1\| PREDICTED: TGF beta-inducible nuclear protein 1 isoform 2 [Macaca m...	445.0	[0..1]	[259..1]
gi\|49118803 - gi\|49118803\|gb\|AAH73255.1\| Unknown (protein for MGC:80606) [Xenopus laevis]	444.0	[0..1]	[259..1]
gi\|41054639, gi\|... - gi\|41054639\|ref\|NP_955862.1\| TGF beta-inducible nuclear protein 1 [Danio rerio], gi\|28278483\|gb\|AAH4...	444.0	[0..1]	[259..1]

Back

Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQNEYIEES IRKHGRRFDH EERKRKKAAR EAHDASLYAQ KTRGIKAKLY QEKRRKEKIQ  60
   61 MKKTIKQHEE RNATQRGSDA QTQGAVPTYL LDREQESQAK MLSSAVKQKR KEKAAKYSVP 120
  121 LPQVRGVAEE EMFKV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRTGKSKKNS WKRMITKATF VGDGFTRRPV KYERFIRPMA LRQKKANVTH KELGVTMQLP  60
   61 IIGVKKNPQS PTYTQLGVLT KGTVIEVNVS ELGLVTSGGK VVWGKYAQIT NNPELDGCVN 120
  121 ALLLT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits