YRC Public Data Repository - Protein Structure Prediction

Protein:	sen34
Organism:	Schizosaccharomyces pombe
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sen34.

Description	E-value	Query Range	Subject Range
gi\|42550758, gi\|... - gi\|46116866\|ref\|XP_384451.1\| hypothetical protein FG04275.1 [Gibberella zeae PH-1], gi\|42550758\|gb\|E...	264.0	[0..2]	[281..5]
gi\|49084222, gi\|... - gi\|67515817\|ref\|XP_657794.1\| hypothetical protein AN0190.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	247.0	[0..3]	[274..6]
gi\|114190245, gi... - gi\|115401432\|ref\|XP_001216304.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	243.0	[0..3]	[282..6]
SEN34_NEUCR - Probable tRNA-splicing endonuclease subunit tsp-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-... SEN34_NEUCR, SE3... - Probable tRNA-splicing endonuclease subunit sen-34 OS=Neurospora crassa GN=sen-34 PE=3 SV=1, (Q7SAK9...	241.0	[0..2]	[282..6]
gi\|83770002 - gi\|83770002\|dbj\|BAE60137.1\| unnamed protein product [Aspergillus oryzae] gi\|169775343 - gi\|169775343\|ref\|XP_001822139.1\| hypothetical protein [Aspergillus oryzae RIB40]	233.0	[0..5]	[282..8]
gi\|70997583, gi\|... - gi\|70997583\|ref\|XP_753534.1\| tRNA-splicing endonuclease subunit sen34 [Aspergillus fumigatus Af293],...	232.0	[0..3]	[282..6]
gi\|119192574, gi... - gi\|90305679\|gb\|EAS35310.1\| hypothetical protein CIMG_00664 [Coccidioides immitis RS], gi\|119192574\|r...	229.0	[0..5]	[282..26]
gi\|109126016, gi... - gi\|109126022\|ref\|XP_001082500.1\| PREDICTED: tRNA splicing endonuclease 34 homolog (SEN34, S. cerevis...	228.0	[0..8]	[281..4]
gi\|114679004, gi... - gi\|114679014\|ref\|XP_001174914.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114... TSEN34 - tRNA splicing endonuclease 34 homolog (S. cerevisiae)	227.0	[0..8]	[281..4]
gi\|10438595 - gi\|10438595\|dbj\|BAB15284.1\| unnamed protein product [Homo sapiens]	226.0	[0..8]	[281..4]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDEKFPISY VHGKFLVFDV QAVEVFRKNY HILGTLVGTL PQLPQQNVFL GLPMELSKEE  60
   61 AFYLIEKGIS YIVDDTKVHK QLLENTTKDD VKQCLKKRQS LAYDQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [106-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAAKKKENE KKIEIMKKLG RTLPLDPLNY DEHDSFDLSW IPVDTVTTRI AEKSSMNDDF  60
   61 HKEEDVFENL DINRYLMFKS LVDTGFYLNP GLRFGCQFVA YPGDALRYHS HYLVNSYKWD 120
  121 QEIPVLFLIG GGRLGTAVKK TWLIGGSNDR NINMNGEKSK EELLLLPVRH FSIEWAGFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	2cv8A
Description:	Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits