YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17G6.05c
Organism:	Schizosaccharomyces pombe
Length:	775 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17G6.05c.

Description	E-value	Query Range	Subject Range
MYH2_PIG - Myosin-2 OS=Sus scrofa GN=MYH2 PE=2 SV=1 gi\|55741490 - ref\|NP_999301.1\| myosin heavy chain 2a [Sus scrofa]	279.0	[0..2]	[760..1184]
MYH1_BOVIN - Myosin-1 OS=Bos taurus GN=MYH1 PE=2 SV=2	279.0	[0..2]	[760..1183]
MYH4_MOUSE - Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1	279.0	[0..2]	[760..1184]
MYH4_RAT - Myosin-4 OS=Rattus norvegicus GN=Myh4 PE=1 SV=1	279.0	[0..2]	[760..1184]
gi\|109113271 - gi\|109113271\|ref\|XP_001113877.1\| PREDICTED: myosin, heavy polypeptide 2, skeletal muscle, adult [Mac...	277.0	[0..2]	[760..1184]
gi\|50757621 - gi\|50757621\|ref\|XP_415581.1\| PREDICTED: similar to fast myosin heavy chain isoform 3 [Gallus gallus]	277.0	[0..2]	[761..1285]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLATPFFY LNKKETKHSD WVEPFTTFVS RIYGNSVDVE DQIKAFNTLR ENAADVDDTV  60
   61 AGKDILYSYY GQLDYLSFRF PTGGNGINIS FEWSDILDPD ADFVKQSSLA FEKASVLFNL 120
  121 VSLLSRMAAN HASAYTVDDY KAAANCLQCA SGIAKLLRES FIHAPGRDLD SNFLLGIYNL 180
  181 FLGQAQECVL GHMSFSASDS NMNYSLAAKI ASSAATLYDS CVHAFESMEP ACNPNFIRLA 240
  241 SAKKAALEGF SSYFMARAQL EKSKQGLAIG YLQQAKSILS SAQKLFNGIK LSTDFIHKPS 300
  301 LSDYPQTIST FI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	7.98
Match:	1zb1A
Description:	Structure basis for endosomal targeting by the Bro1 domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [313-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSSLSHLLKT AEKDNDFVFH DLVVKEVELP KISPLQALPP LPLEKLYGSQ DGFETAKKIV  60
   61 GDDLFKAFVP SAVTTASSLY SEETAKVFRA EQAEVERQNT QMATVFASLD LSRLQEITHS 120
  121 D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.69897
Match:	1c1gA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [434-775]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKTNFIPKEL IEARSQLISF NPTFKIHELF AKSTKLKQII AKIKSDLEVE ANENAKMKAK  60
   61 LGPSWTLSDS LEFAAPYQSE LNNYLKTLAE ASATDSAISQ QYALVKDDVE TLCNSSKISA 120
  121 LLESSISSTD NSGQSLLDIP IEQEEQERDM KIQLDLLEEL QSRVQKLVPE RQTTLQALQQ 180
  181 KCLQDDISES LMQNSKRKDS ALDTNQLFEL ELKKFDPLRN RLHASYRQQQ LLLNEMRNVT 240
  241 QKLKQNPEFL RKMEVYNNQF SKNKELCSNL LSSSLTAKAI SEGVSKGLEY YKTVEQRLAE 300
  301 INKTLGEQLL LRRKQGATCL SKLSSSSSSH TSISSNMRNL HI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.154902
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits