YRC Public Data Repository - Protein Structure Prediction

Protein:	mug14
Organism:	Schizosaccharomyces pombe
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug14.

Description	E-value	Query Range	Subject Range
gi\|42547893, gi\|... - gi\|46107814\|ref\|XP_380966.1\| hypothetical protein FG00790.1 [Gibberella zeae PH-1], gi\|42547893\|gb\|E...	267.0	[0..3]	[255..82]
gi\|76620502 - gi\|76620502\|ref\|XP_611206.2\| PREDICTED: similar to Alpha adducin (Erythrocyte adducin alpha subunit)...	263.0	[0..1]	[257..117]
gi\|119331100, gi... - gi\|60098761\|emb\|CAH65211.1\| hypothetical protein [Gallus gallus], gi\|119331100\|ref\|NP_001073198.1\| a...	263.0	[0..1]	[257..124]
ADDA_RAT - Alpha-adducin OS=Rattus norvegicus GN=Add1 PE=1 SV=2	263.0	[0..1]	[257..124]
ADD1 - adducin 1 (alpha)	263.0	[0..1]	[257..124]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKVTGLPEF EDLHTKRKWM LNHMAAAFRM FGRNGYNEGT AGHVTVRDPI DENTFWINPL  60
   61 EVPFSLMKPS DLVHINSDGE IIGGSKMKYN TSGFAIHYEM HKVRPEVICV CHVHSIYGKA 120
  121 FSALGKPLDM LNTDCCVFYN NHGIYFDMDD VISMPEEGRR TAKGLADYKA VLVQNHGIMT 180
  181 VGTTVDEAAY LLSLMERSCQ IQLLIDSATK VGERKHVHPT RAKAIRENAD NPVGLYTAQQ 240
  241 PNFLYEVACS NGELEII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1jdiA
Description:	L-ribulose-5-phosphate 4-epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.58067730905989	bayes_pls_golite062009
binding	0.745451854950635	bayes_pls_golite062009
aldehyde-lyase activity	0.580063424429242	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: