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View Structure Prediction Details

Protein: SPBC3B8.05
Organism: Schizosaccharomyces pombe
Length: 436 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3B8.05.

Description E-value Query
Range
Subject
Range
DPH1 - DPH1 homolog (S. cerevisiae)
559.0 [0..45] [434..30]
DPH1_GIBZE - Diphthamide biosynthesis protein 1 OS=Gibberella zeae GN=DPH1 PE=3 SV=1
DPH1_GIBZE - Diphthamide biosynthesis protein 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRR...
558.0 [0..7] [417..48]
gi|114665638 - gi|114665638|ref|XP_511255.2| PREDICTED: diptheria toxin resistance protein required for diphthamide...
557.0 [0..45] [434..30]
DPH1_MOUSE - Diphthamide biosynthesis protein 1 OS=Mus musculus GN=Dph1 PE=1 SV=1
gi|157169770 - gi|157169770|gb|AAI52730.1| DPH1 homolog (S. cerevisiae) [synthetic construct]
556.0 [0..31] [434..10]
DPH1_NEUCR - Diphthamide biosynthesis protein 1 OS=Neurospora crassa GN=dph-1 PE=3 SV=1
DPH1_NEUCR - Diphthamide biosynthesis protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71...
555.0 [0..4] [417..27]
gi|38105185, gi|... - gi|39942314|ref|XP_360694.1| hypothetical protein MG03237.4 [Magnaporthe grisea 70-15], gb|EAA51642....
555.0 [0..7] [417..32]
DPH1_ASHGO - Diphthamide biosynthesis protein 1 OS=Ashbya gossypii GN=DPH1 PE=3 SV=1
DPH1_ASHGO - Diphthamide biosynthesis protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / ...
552.0 [0..3] [414..6]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVKKSIPK RRFVGKKNRK ENNLDGSNRD VENAALVTIN SKRSAGRVAT QIPEDILNDK  60
   61 AINEAIKLLP QNYN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [75-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FEIHKTIWHI RLRKAKRVAL QLPEGLLMFG CILSDIFEQF CQVETIVMGD VTYGACCIDD  60
   61 FTARALDCDF LVHYGHSCLI PVDQTPIKVL YVFVDIKIDL QHVVSSLKHN LPSNSRLALV 120
  121 GTIQFVGSLN SIKDALQIQD EDGKGGFYVV IPQAKPLSPG EALGCTSPYI EKGSV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.418 N/A N/A c.23.4 Succinyl-CoA synthetase domains
View Download 0.417 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.396 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.378 N/A N/A c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.361 N/A N/A c.23.6 Cobalamin (vitamin B12)-binding domain

Predicted Domain #3
Region A:
Residues: [250-436]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DALIYIGDGR FHLESVMIAN PDLPAYRYDP YSHKLSIESY AHEEMKSIRY SAVEKARTAK  60
   61 KFGLIQGTLG RQGSPKVLEN LKNTLRKNNK DFVCVLMSEI FPSRLGQFSD IDAWIQVACP 120
  121 RLSIDWGYAF PAPLLTPYEA SAAFNVVPWK EVYPMDFYAT NSLGNWTPNN PENRPLPNRK 180
  181 KTGPVSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle