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View Structure Prediction Details

Protein: SPCP25A2.03
Organism: Schizosaccharomyces pombe
Length: 752 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCP25A2.03.

Description E-value Query
Range
Subject
Range
gi|76651773 - gi|76651773|ref|XP_879576.1| PREDICTED: similar to THO complex subunit 1 (Tho1) (Nuclear matrix prot...
453.0 [0..45] [553..9]
gi|32822787, gi|... - gi|41151980|ref|NP_958481.1| THO complex 1 [Danio rerio], gi|32822787|gb|AAH54938.1| THO complex 1 [...
441.0 [0..46] [581..43]
THOC1_MOUSE - THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1
436.0 [0..6] [553..9]
gi|73961844 - gi|73961844|ref|XP_547651.2| PREDICTED: similar to THO complex subunit 1 (Tho1) (Nuclear matrix prot...
429.0 [0..45] [553..43]
gi|28278733 - gi|28278733|gb|AAH44699.1| LOC398505 protein [Xenopus laevis]
426.0 [0..45] [589..45]
gi|114672500 - gi|114672500|ref|XP_512049.2| PREDICTED: nuclear matrix protein p84 isoform 3 [Pan troglodytes]
424.0 [0..45] [553..43]
gi|90075390 - gi|90075390|dbj|BAE87375.1| unnamed protein product [Macaca fascicularis]
gi|109121739 - gi|109121739|ref|XP_001090085.1| PREDICTED: nuclear matrix protein p84 [Macaca mulatta]
424.0 [0..45] [553..43]
gi|60654241 - gi|60654241|gb|AAX29813.1| THO complex 1 [synthetic construct]
423.0 [0..45] [553..43]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVQKGLIEA FYNTYPLEKA KELDKSPLCS EYELFIKELW PSIVESFHNS TEFETAIRFC  60
   61 CYETARKSEI GLEERLKCLF AILDLLVIGN EINESFCDHL LPFLILEELM DIHTVNECAK 120
  121 LYEYFETRPS LMKGIVSNRG RGPVLLRISN ELLRRLSRQE NSSFCGRIDI LLSKAF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [177-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPEERSGANL RGDYNTVHSF GKVELSPPST PISDRTDLSY HKKLNTLFTA YWDLQCMCSN  60
   61 PPKLLASDTL PKFIDAAGSA IQAFESILQN TFFNGKSNPT IDPNSSSLLS EKYITLDKGF 120
  121 PSKYIYSRSL FE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.876 a.29.13 Description not found.

Predicted Domain #3
Region A:
Residues: [309-539]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YQLSDEDFRL QAILQLIIIF DFLLDHSKER IERRTLEKWT NKAVIPIVIL SDEDTSKLNE  60
   61 LSKEAYSFLH TARCGSVQRT IKEIIHIEGN WKLWKGLGCP SLEKPLVDKA AIDEAVEGLK 120
  121 KLTNTPVKLR FAMGNAALSR LWEQAGENTL DDLKKEERYR IPSPESFLSG VKADKFEIEE 180
  181 AVRDDDKHFH EQSLATKTWR AFRSAINSHL QNFSDTGLGD VELLCNSIEG K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [540-752]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTTSKITPSI PPAFDIHIIE GEELLEEMKK RENVKHNSQN FASPMQTDAE GDIVQNEEEK  60
   61 ESVEVEEGKH KNDLPKVSPK PPTEGVDSEV NGESLVQVNK VLKSEDDNTS EASKDPSSHV 120
  121 KSPENIEKLK QNDDHFEVTE EITSTINSKI SEKQENNVAE TILEVTSSPK SSENSQKQSE 180
  181 ITKKRGRDEE DEPSDLHSSP KRPKTGEDGE IVL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle