YRC Public Data Repository - Protein Structure Prediction

Protein:	rrp16
Organism:	Schizosaccharomyces pombe
Length:	419 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rrp16.

Description	E-value	Query Range	Subject Range
gi\|115400663, gi... - gi\|115400663\|ref\|XP_001215920.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	145.0	[0..6]	[414..5]
gi\|66847315, gi\|... - gi\|70989669\|ref\|XP_749684.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668473...	143.0	[0..6]	[414..5]
gi\|49108718, gi\|... - gi\|67901014\|ref\|XP_680763.1\| hypothetical protein AN7494.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	142.0	[0..6]	[415..5]
gi\|42795407, gi\|... - gi\|55778544\|gb\|AAH86359.1\| Glioma tumor suppressor candidate region gene 2 [Rattus norvegicus], gi\|4...	138.0	[0..31]	[414..59]
gi\|19387929 - gi\|19387929\|gb\|AAH25810.1\| Gltscr2 protein [Mus musculus]	136.0	[0..31]	[414..46]
gi\|85105117 - gi\|85105117\|ref\|XP_961893.1\| hypothetical protein NCU05233 [Neurospora crassa OR74A] gi\|32408217, gi\|... - gi\|32408217\|ref\|XP_324590.1\| hypothetical protein [Neurospora crassa], gi\|28923476\|gb\|EAA32657.1\| co...	136.0	[0..7]	[415..12]
gi\|7549210 - gi\|7549210\|gb\|AAF63787.1\|AF142406_1 200 kDa antigen p200 [Babesia bigemina]	134.0	[0..5]	[365..215]

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Predicted Domain #1

Region A:
Residues: [1-419]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKERNAPS QYKQSSRKNK RAWRKNIDLE DIESGLEQTR DEEIKGGNVE HKPNDALFVI  60
   61 DTLGDDRIAK RSRKKIKPLK VDQILENKSS IEKVHSHLTN NSTESNKKGK IFSRKELNRL 120
  121 QALVYKNKDG LTATSAASEL KNTKQPKESY DVWETNPTVT IPVKRPSTLS KLPESLTENN 180
  181 AKVPNVVIAD PGMSYNPDAA AWMKLLDTKG SEELKKEQKR ISELEEKERI QKKAFEDKGL 240
  241 VSDQDVNHSI DSDDQSEHEQ AETPIPSSKN KRKTRSQRNK IRQRREEELR LLEQKKNEEL 300
  301 LRTIDKAPAI SKKLQQKDKA EKFSNKAVSS STTEIKLKKK KFGKHRLPNN PLEIKLGDEL 360
  361 TSSLRELKPE GNLFADRYLS LQQRAMVPPS LPVLKKSKYR AKIKEKYSHK DFHLQKNSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.09691
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits