YRC Public Data Repository - Protein Structure Prediction

Protein:	ini1
Organism:	Schizosaccharomyces pombe
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ini1.

Description	E-value	Query Range	Subject Range
gi\|39794099 - gi\|39794099\|gb\|AAH63807.1\| Phf5a protein [Rattus norvegicus]	196.0	[0..1]	[114..1]
gi\|25406958, gi\|... - gi\|8954029\|gb\|AAF82203.1\|AC067971_11 Identical to an unknown protein F23F1.8 gi\|7486045 from Arabido...	195.0	[0..1]	[106..1]
gi\|115969413, gi... - gi\|72032358\|ref\|XP_799069.1\| PREDICTED: similar to conserved hypothetical protein [Strongylocentrotu...	183.0	[0..1]	[110..1]
gi\|167872294, gi... - gi\|170050839\|ref\|XP_001861492.1\| pre-mRNA-splicing factor ini1 [Culex quinquefasciatus], gi\|16787229... gi\|108880783, gi... - gi\|157137675\|ref\|XP_001657126.1\| hypothetical protein AaeL_AAEL003695 [Aedes aegypti], gi\|108880783\|...	183.0	[0..1]	[110..1]
gi\|91093335 - gi\|91093335\|ref\|XP_967031.1\| PREDICTED: similar to PHD-finger 5A [Tribolium castaneum]	183.0	[0..1]	[110..1]
gi\|149743072 - gi\|149743072\|ref\|XP_001502540.1\| PREDICTED: similar to PHD-finger 5A [Equus caballus] PHF5A_MOUSE - PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=1 SV=1 gi\|57092723 - gi\|57092723\|ref\|XP_531718.1\| PREDICTED: similar to transcription factor INI [Canis familiaris] gi\|134085850, gi... - gi\|76617047\|ref\|XP_583749.2\| PREDICTED: similar to OTTHUMP00000028653 [Bos taurus], gi\|134085850\|ref... gi\|542160016\|ref... - PREDICTED: PHD finger-like domain-containing protein 5A [Zonotrichia albicollis] gi\|83406038, gi\|... - gi\|83406038\|gb\|AAI10790.1\| LOC496306 protein [Xenopus laevis], gi\|57032524\|gb\|AAH88823.1\| LOC496306 ... gi\|213512931, gi... - gi\|213512931\|ref\|NP_001135312.1\| PHD finger-like domain-containing protein 5A [Salmo salar], gi\|2097... PHF5A_RAT - PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1 gi\|28278016, gi\|... - gi\|68390528\|ref\|XP_698300.1\| PREDICTED: similar to transcription factor INI [Danio rerio], gi\|282780... tr\|M3W0S1\|M3W0S1... - PHD finger protein 5A OS=Felis catus GN=PHF5A PE=4 SV=1 gi\|194332809, gi... - gi\|194332809\|ref\|NP_001123712.1\| hypothetical protein LOC100170460 [Xenopus (Silurana) tropicalis], ... PHF5A - PHD finger protein 5A HGNC:18000\|Ensem... - finger protein 5A gi\|50728672 - gi\|50728672\|ref\|XP_416230.1\| PREDICTED: similar to OTTHUMP00000028653 [Gallus gallus] gi\|126343682 - gi\|126343682\|ref\|XP_001363497.1\| PREDICTED: similar to OTTHUMP00000028653 [Monodelphis domestica] gi\|114686627 - gi\|114686627\|ref\|XP_001169412.1\| PREDICTED: PHD-finger 5A [Pan troglodytes] gi\|109451052, gi... - gi\|224487745\|dbj\|BAH24107.1\| PHD finger protein 5A [synthetic construct], gi\|167773545\|gb\|ABZ92207.1... tr\|G1T3W6\|G1T3W6... - pep:novel scaffold:oryCun2:GL018734:993607:1002355:1 gene:ENSOCUG00000012705 transcript:ENSOCUT00000...	182.0	[0..1]	[110..1]
gi\|21301692, gi\|... - gi\|31234226\|ref\|XP_319026.1\| AGAP009905-PA [Anopheles gambiae str. PEST], gi\|21301692\|gb\|EAA13837.1\|... AGAP009905-PA - PHD finger-like domain-containing protein 5A\|protein_coding\|3R:45185052:45185553:1\|gene:AGAP009905	181.0	[0..1]	[109..1]
gi\|114609146 - gi\|114609146\|ref\|XP_525608.2\| PREDICTED: similar to OTTHUMP00000028653 [Pan troglodytes]	181.0	[0..1]	[110..1]
CG9548-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9548 (CG9548, FBgn0031822). It is a protein... gi\|194132956, gi... - gi\|195343040\|ref\|XP_002038106.1\| GM17932 [Drosophila sechellia], gi\|194132956\|gb\|EDW54524.1\| GM17932... gi\|194165469, gi... - gi\|195443358\|ref\|XP_002069384.1\| GK18690 [Drosophila willistoni], gi\|194165469\|gb\|EDW80370.1\| GK1869... gi\|194174276, gi... - gi\|195471770\|ref\|XP_002088175.1\| GE18435 [Drosophila yakuba], gi\|194174276\|gb\|EDW87887.1\| GE18435 [D... gi\|194190390, gi... - gi\|195577040\|ref\|XP_002078381.1\| GD22570 [Drosophila simulans], gi\|194190390\|gb\|EDX03966.1\| GD22570 ... gi\|190661892, gi... - gi\|194862536\|ref\|XP_001970025.1\| GG23616 [Drosophila erecta], gi\|190661892\|gb\|EDV59084.1\| GG23616 [D...	181.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKHHPDLVL CRRQPGITVG KLCERCDEKC PICDSHVRPT TLVRICDECA FGSSQDRCII  60
   61 CGAPGVSDCY YCSECTRMEY DRDGCPRVIN LGSSRTDWFY ERKKFKNAGK EMPGATY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	91.142668
Match:	PF03660.5
Description:	No description for PF03660.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.536	N/A	N/A	d.352.1	Description not found.
View	Download	0.508	N/A	N/A	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.506	N/A	N/A	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.450	N/A	N/A	d.19.1	MHC antigen-recognition domain
View	Download	0.415	N/A	N/A	d.110.3	PYP-like sensor domain (PAS domain)
View	Download	0.405	N/A	N/A	d.92.2	beta-N-acetylhexosaminidase-like domain
View	Download	0.404	N/A	N/A	d.110.3	PYP-like sensor domain (PAS domain)
View	Download	0.367	N/A	N/A	c.53.1	Resolvase-like
View	Download	0.337	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.331	N/A	N/A	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits