YRC Public Data Repository - Protein Structure Prediction

Protein:	ucp7
Organism:	Schizosaccharomyces pombe
Length:	697 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ucp7.

Description	E-value	Query Range	Subject Range
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	265.0	[0..104]	[694..6]
gi\|110552556, gi... - gi\|110603348\|ref\|ZP_01391425.1\| Tetratricopeptide TPR_1:Tetratricopeptide TPR_3:Tetratricopeptide TP...	256.0	[0..142]	[692..64]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	255.0	[0..93]	[696..451]
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	248.0	[0..142]	[694..75]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	236.0	[0..124]	[627..69]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	236.0	[0..124]	[621..206]
gi\|76659271 - gi\|76659271\|ref\|XP_884992.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [...	233.0	[0..124]	[601..69]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDLLDFNFY DKSTPSNQNN YSNNNSRTPS YSLPAPVAQK KNAQIPLKAS KPEDPFANLF  60
   61 QKKTDNKISL KELERQKVGT PDSNSTPKSS NYDPFENLEI LHQLSNTPRD KDAVIHDKIE 120
  121 ENKRPISQPQ VSASEKVTLK DLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.211	0.956	ER-associated protein catabolic process	c.37.1	P-loop containing nucleoside triphosphate hydrolases

Predicted Domain #2

Region A:
Residues: [144-632]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEPHQPVSLP AFENIGSETS IPFENHNEIT NMNTAKDKLS SNEMYEKLRD LGFSDDQSRL  60
   61 ALENSGSLED AIEYILEKDN AKGQYREGEA YEAFSDSSAK TQFSDFQALS NQLKSQLFEK 120
  121 ANDLWNIGRK KLRDAVEERR AVKDPSKPRW MDASHDFGRE ATPEILPKTP IPKRKPHKVP 180
  181 MNEKVSEDRI TTNQSRSGND ESSLVDFLTS KSDNSSFNFP SDTYEGTENI LETAYESTTA 240
  241 RQVNNNKPGK STVKKREEET LNNMVSALVE EQQSTGNELF RKGDFSQAIE EFTNSLSQLP 300
  301 AKHTKRVPLL SNRSLCYQKV GDLKTCLQDV DELVDIIGEE KGHGESIRDK SMNDYYVKNM 360
  361 VRKAQVLEQL EKYQESLNIW KDLIADGQIS KLYIDGKHRC EAAISSHSSE SHSKRTTQQP 420
  421 KSTPNHTNIK VKSERLQHVR MAQQKAEQLD EERSRLREPV QQIVNKWKEG KESNLRALLA 480
  481 SLDTILWPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	2gw1A
Description:	No description for 2gw1A was found.

Predicted Domain #3

Region A:
Residues: [633-697]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRWQKVSLSE LVLPKKVKIA YMKAVSRVHP DKLPQQTSVE HQLIAESAFS ILNHAWELFK  60
   61 QQNDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.045757
Match:	1n4cA
Description:	NMR Structure of the J-Domain and Clathrin Substrate Binding Domain of Bovine Auxilin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits