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View Structure Prediction Details

Protein: clr2
Organism: Schizosaccharomyces pombe
Length: 537 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clr2.

Description E-value Query
Range
Subject
Range
gi|32419885, gi|... - gi|32419885|ref|XP_330386.1| predicted protein [Neurospora crassa], gi|28926220|gb|EAA35202.1| predi...
gi|85112945 - gi|85112945|ref|XP_964438.1| hypothetical protein NCU09736 [Neurospora crassa OR74A]
118.0 [0..129] [216..69]
gi|116195852, gi... - gi|88180437|gb|EAQ87905.1| hypothetical protein CHGG_04524 [Chaetomium globosum CBS 148.51], gi|1161...
100.0 [0..120] [211..59]
gi|111057445 - gi|111057445|gb|EAT78565.1| hypothetical protein SNOG_13940 [Phaeosphaeria nodorum SN15]
67.0 [0..126] [199..83]
gi|90304266, gi|... - gi|90304266|gb|EAS33897.1| hypothetical protein CIMG_04921 [Coccidioides immitis RS], gi|119189747|r...
60.0 [0..129] [198..72]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAITCVWSD GRSDTWPNVN GHSRTRSVPS LKPLPHQDSK NLLYRQICGR LLAQHVFGGA  60
   61 GSTQPILNQL CKRLSTGNPN NTNASTVVTA PEKNVVSARH VRPNPKSSKD TLEKQP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [117-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYSSQIYLTD SFENYYLASL PTNYQLYQRD SNRENGNGKR EFWLYGHPSG RPFRSVNDFL  60
   61 HHLYWLISDL T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [188-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNESTCCCVL CSGNMTRVRK NLQKENERMF HECKDDTYTW PSSYRLGEVV WIDINNELIP  60
   61 AIIVARNLIN YESNQMDAVK LISDTFVEPY QYHCKQLGNS RYYFDMAAAD IEPWSRHPLD 120
  121 LQKQEHLVAH SICQTWNLFG IFQPLEGIDM 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [338-432]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEPKFHDENY SIPLTVLPTF GGESNSLDDH FYGIFRGAEK LWINDLCVIS TSSLPSVLQK  60
   61 TSFMYISDIY VNEDDIVCFQ GSLWTQIDKN ALDYN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [433-537]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSADNIDEHK DDLKELPRRL QMVSKLSNTY FRCLHDKSVE YVCPFADVLG RWYEPWFVKG  60
   61 DLNYTSEVKE RTSSRLSAVG SENWVDDDFY EYLLSEIDMV SAVVM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.922 a.24.10 Histidine-containing phosphotransfer domain, HPT domain


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