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View Structure Prediction Details

Protein: SPAC1B3.09c
Organism: Schizosaccharomyces pombe
Length: 528 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1B3.09c.

Description E-value Query
Range
Subject
Range
NOC2L_MOUSE - Nucleolar complex protein 2 homolog OS=Mus musculus GN=Noc2l PE=1 SV=2
639.0 [0..2] [524..58]
gi|73956454 - gi|73956454|ref|XP_546728.2| PREDICTED: similar to UPF0120 protein DKFZp564C186 [Canis familiaris]
616.0 [0..2] [524..69]
NOC2L - nucleolar complex associated 2 homolog (S. cerevisiae)
609.0 [0..2] [525..55]
NOC2L_BOVIN - Nucleolar complex protein 2 homolog OS=Bos taurus GN=NOC2L PE=2 SV=1
589.0 [0..2] [525..55]
gi|108995450 - gi|108995450|ref|XP_001089937.1| PREDICTED: nucleolar complex associated 2 homolog [Macaca mulatta]
584.0 [0..2] [525..55]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKASKATKK FTKNHLKNTI ERRKQLARSK KVYGTKNRNS HTKNKLESGT NDNNKNKEDL  60
   61 SKLYSDVTTS NTSHEKDGSE DISVLNVNSK GASLNQVSTQ KRRSEKDLLA AIAYCQKLSG 120
  121 TNQADALWKN VEKDLKET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [139-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDNVDFDARS KILQDLRLEY AEILLTKFNF EKKGYQNLSS ALDTILHIKK FSKFPNGLVT  60
   61 QLCNIFVNHS KAREDIQKAV NHICKIDSSL SVAVFQVFYS PLLDFFKSSP SEVNDFDTLE 120
  121 ELQLFLIELL SLNSRFYQKI AFAYLSQLDA HLKRCLKESE SSDAYKLIYN WQFTLSLRFW 180
  181 LHVISFLWND YESISKEISP IAINLTLDCI RLIPTEQYY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [358-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRLHLLKSL VNICRSTRLY IPLSSQFLEM IPFVLRRSSP LSDDKEVMYN FDMYSTLHVP  60
   61 KECLLSKSYR NNVRKEVILL MTEYFAIFSN SI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [450-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFPELSAPII AQLRGLVNES APGKHVLTFL NKLESTFSFV ESRRMNVDFT LNDTSQVEAF  60
   61 EKDLDWRSTP MGKLVSDTT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle