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View Structure Prediction Details

Protein: SPAC1B3.09c
Organism: Schizosaccharomyces pombe
Length: 528 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1B3.09c.

Description E-value Query
Range
Subject
Range
NOC2L_MOUSE - Nucleolar complex protein 2 homolog OS=Mus musculus GN=Noc2l PE=1 SV=2
639.0 [0..2] [524..58]
gi|73956454 - gi|73956454|ref|XP_546728.2| PREDICTED: similar to UPF0120 protein DKFZp564C186 [Canis familiaris]
616.0 [0..2] [524..69]
NOC2L - nucleolar complex associated 2 homolog (S. cerevisiae)
609.0 [0..2] [525..55]
NOC2L_BOVIN - Nucleolar complex protein 2 homolog OS=Bos taurus GN=NOC2L PE=2 SV=1
589.0 [0..2] [525..55]
gi|108995450 - gi|108995450|ref|XP_001089937.1| PREDICTED: nucleolar complex associated 2 homolog [Macaca mulatta]
584.0 [0..2] [525..55]

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Predicted Domain #1
Region A:
Residues: [1-138]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKASKATKK FTKNHLKNTI ERRKQLARSK KVYGTKNRNS HTKNKLESGT NDNNKNKEDL  60
   61 SKLYSDVTTS NTSHEKDGSE DISVLNVNSK GASLNQVSTQ KRRSEKDLLA AIAYCQKLSG 120
  121 TNQADALWKN VEKDLKET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [139-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDNVDFDARS KILQDLRLEY AEILLTKFNF EKKGYQNLSS ALDTILHIKK FSKFPNGLVT  60
   61 QLCNIFVNHS KAREDIQKAV NHICKIDSSL SVAVFQVFYS PLLDFFKSSP SEVNDFDTLE 120
  121 ELQLFLIELL SLNSRFYQKI AFAYLSQLDA HLKRCLKESE SSDAYKLIYN WQFTLSLRFW 180
  181 LHVISFLWND YESISKEISP IAINLTLDCI RLIPTEQYY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [358-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRLHLLKSL VNICRSTRLY IPLSSQFLEM IPFVLRRSSP LSDDKEVMYN FDMYSTLHVP  60
   61 KECLLSKSYR NNVRKEVILL MTEYFAIFSN SI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [450-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFPELSAPII AQLRGLVNES APGKHVLTFL NKLESTFSFV ESRRMNVDFT LNDTSQVEAF  60
   61 EKDLDWRSTP MGKLVSDTT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle