YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1B3.04c
Organism:	Schizosaccharomyces pombe
Length:	646 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1B3.04c.

Description	E-value	Query Range	Subject Range
LEPA_GEOKA - Elongation factor 4 OS=Geobacillus kaustophilus GN=lepA PE=3 SV=1 LEPA_GEOKA - Elongation factor 4 OS=Geobacillus kaustophilus (strain HTA426) GN=lepA PE=3 SV=1	585.0	[0..51]	[645..6]
LEPA_BACC1 - Elongation factor 4 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=lepA PE=3 SV=1 gi\|229198447, gi... - gi\|229198447\|ref\|ZP_04325151.1\| GTP-binding protein lepA [Bacillus cereus m1293], gi\|228584950\|gb\|EE...	584.0	[0..51]	[645..6]
gi\|254757772 - gi\|254757772\|ref\|ZP_05209799.1\| GTP-binding protein LepA [Bacillus anthracis str. Australia 94] gi\|190562059, gi... - gi\|190567068\|ref\|ZP_03019984.1\| GTP-binding protein LepA [Bacillus anthracis Tsiankovskii-I], gi\|190... gi\|254750900 - gi\|254750900\|ref\|ZP_05202939.1\| GTP-binding protein LepA [Bacillus anthracis str. Vollum] gi\|172081533, gi... - gi\|177653251\|ref\|ZP_02935503.1\| GTP-binding protein LepA [Bacillus anthracis str. A0174], gi\|1720815... gi\|254741462 - gi\|254741462\|ref\|ZP_05199149.1\| GTP-binding protein LepA [Bacillus anthracis str. Kruger B] gi\|170707378, gi... - gi\|170707378\|ref\|ZP_02897832.1\| GTP-binding protein LepA [Bacillus anthracis str. A0389], gi\|1701276... gi\|170668645, gi... - gi\|170687450\|ref\|ZP_02878667.1\| GTP-binding protein LepA [Bacillus anthracis str. A0465], gi\|1706686... gi\|167513441, gi... - gi\|167638593\|ref\|ZP_02396869.1\| GTP-binding protein LepA [Bacillus anthracis str. A0193], gi\|1675134... gi\|167634498, gi... - gi\|167634498\|ref\|ZP_02392818.1\| GTP-binding protein LepA [Bacillus anthracis str. A0442], gi\|1675299... gi\|49181141, gi\|... - gi\|49187214\|ref\|YP_030466.1\| GTP-binding protein LepA [Bacillus anthracis str. Sterne], gi\|49181141\|... gi\|165872104, gi... - gi\|165872104\|ref\|ZP_02216744.1\| GTP-binding protein LepA [Bacillus anthracis str. A0488], gi\|1647122... gi\|254736424 - gi\|254736424\|ref\|ZP_05194130.1\| GTP-binding protein LepA [Bacillus anthracis str. Western North Amer... gi\|254721910 - gi\|254721910\|ref\|ZP_05183699.1\| GTP-binding protein LepA [Bacillus anthracis str. A1055] gi\|254684076 - gi\|254684076\|ref\|ZP_05147936.1\| GTP-binding protein LepA [Bacillus anthracis str. CNEVA-9066] LEPA_BACAC - Elongation factor 4 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=lepA PE=3 SV=1	583.0	[0..51]	[645..6]
LEPA_MOOTA - Elongation factor 4 OS=Moorella thermoacetica (strain ATCC 39073) GN=lepA PE=3 SV=1	582.0	[0..54]	[645..4]
gi\|229157933, gi... - gi\|229157933\|ref\|ZP_04286006.1\| GTP-binding protein lepA [Bacillus cereus ATCC 4342], gi\|228625541\|g... gi\|228987570, gi... - gi\|228987570\|ref\|ZP_04147688.1\| GTP-binding protein lepA [Bacillus thuringiensis serovar tochigiensi... gi\|47553986, gi\|... - gi\|47569315\|ref\|ZP_00239999.1\| GTP-binding protein LepA [Bacillus cereus G9241], gi\|47553986\|gb\|EAL1...	582.0	[0..51]	[645..6]
gi\|30264390, gi\|... - gi\|30264390\|ref\|NP_846767.1\| GTP-binding protein LepA [Bacillus anthracis str. Ames], gi\|30259048\|gb... gi\|65321692, gi\|... - gi\|65321692\|ref\|ZP_00394651.1\| COG0481: Membrane GTPase LepA [Bacillus anthracis str. A2012], ref\|NP... gi\|47504989, gi\|... - gi\|47529841\|ref\|YP_021190.1\| GTP-binding protein LepA [Bacillus anthracis str. 'Ames Ancestor'], gi\|... LEPA_BACAN - Elongation factor 4 OS=Bacillus anthracis GN=lepA PE=3 SV=1 LEPA_BACAA - Elongation factor 4 OS=Bacillus anthracis (strain A0248) GN=lepA PE=3 SV=1	582.0	[0..51]	[645..6]
LEPA_BACAH - Elongation factor 4 OS=Bacillus thuringiensis (strain Al Hakam) GN=lepA PE=3 SV=1 gi\|228596818, gi... - gi\|229186559\|ref\|ZP_04313720.1\| GTP-binding protein lepA [Bacillus cereus BGSC 6E1], gi\|228596818\|gb... gi\|196024413, gi... - gi\|196044925\|ref\|ZP_03112159.1\| GTP-binding protein LepA [Bacillus cereus 03BB108], gi\|196024413\|gb\|... LEPA_BACCZ - Elongation factor 4 OS=Bacillus cereus (strain ZK / E33L) GN=lepA PE=3 SV=1 LEPA_BACHK - Elongation factor 4 OS=Bacillus thuringiensis subsp. konkukian GN=lepA PE=3 SV=1 LEPA_BACC3 - Elongation factor 4 OS=Bacillus cereus (strain 03BB102) GN=lepA PE=3 SV=1 gi\|196039360, gi... - gi\|196039360\|ref\|ZP_03106666.1\| GTP-binding protein LepA [Bacillus cereus NVH0597-99], gi\|196029987\|... LEPA_BACHK - Elongation factor 4 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=lepA PE=3 SV=1	581.0	[0..51]	[645..6]
LEPA_BACHD - Elongation factor 4 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /... LEPA_BACHD - Elongation factor 4 OS=Bacillus halodurans GN=lepA PE=3 SV=1	580.0	[0..51]	[645..6]
LEPA_BACCR - Elongation factor 4 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9...	580.0	[0..51]	[645..6]
LEPA_BACSK - Elongation factor 4 OS=Bacillus clausii (strain KSM-K16) GN=lepA PE=3 SV=1	579.0	[0..51]	[645..6]

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Predicted Domain #1

Region A:
Residues: [1-571]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFRLSRTF SLETCLKSSS FKIRWRFFSV SYASRKLASE DNKPSIQEVV RGIPQNRVRN  60
   61 WAVIAHIDHG KSTLSDCILK LTGVINEHNF RNQFLDKLEV ERRRGITVKA QTCSMIYYYH 120
  121 GQSYLLNLID TPGHVDFRAE VMHSLAACEG CILLVDASQG IQAQTLSNFY MAFSQNLVII 180
  181 PVLNKVDLPT ADVDRTLIQV QQTFDIPMSK PILVSSKTGK NVEQILPEII QKIPPPKGSE 240
  241 NAPLRCLLID SWYNSYQGVI GLVRIMEGFI KKGGKVMSVN TGRKYEVQQV GIMYPDMTEV 300
  301 SRLRAGQVGY IIWNMKNIDE AIVGDTYSTI GSNVEALPGF SIPQSMVYVG AFPLDGSDYE 360
  361 RLNDNIEQLA LNDRAINVQK ENSSALGMGW RLGFLGTLHL SVFIDRLKDE YGKELLITSP 420
  421 TVPYRIKYKN GREEVISNPN LFPTNHQGIS ELLEPTVDAT IITPSEYLGD VIKLCESCRG 480
  481 LQKDCTYMSE SRCMIKYQLP LAHLVEDFFG RLKGTTSGFA TLDYEESDYV PADLVRLSIF 540
  541 MSGKSVDALC SIVHRSLALQ RGREWIQRLK P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	1zn0B
Description:	Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [572-646]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVPKQLYEVI LQAVIDNRVV ARESISALRK NVTAKCYGGD VTRKQKLLNK QKEGKKRLKS  60
   61 VGNVSIDKSV SNYIA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.337242
Match:	PF06421.3
Description:	No description for PF06421.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.358	0.254	GTP binding	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.418	0.005	GTPase activity	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.373	0.004	GTPase activity	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.408	0.003	GTPase activity	f.14.1	Voltage-gated potassium channels
View	Download	0.415	0.000	GTPase activity	a.5.7	4-hydroxy-2-oxovalerate aldolase DmpG, communication domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits