YRC Public Data Repository - Protein Structure Prediction

Protein:	mug61
Organism:	Schizosaccharomyces pombe
Length:	844 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug61.

Description	E-value	Query Range	Subject Range
SRC1_YEAST - Inner nuclear membrane protein SRC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRC1... SRC1 - Inner nuclear membrane protein that functions in regulation of subtelomeric genes and is linked to T...	445.0	[0..1]	[836..1]
gi\|85111619 - gi\|85111619\|ref\|XP_964023.1\| hypothetical protein NCU09319 [Neurospora crassa OR74A] gi\|32423147, gi\|... - gi\|32423147\|ref\|XP_332011.1\| hypothetical protein [Neurospora crassa], gi\|28925782\|gb\|EAA34787.1\| pr...	409.0	[0..1]	[836..4]
gi\|45190906, gi\|... - gi\|45190906\|ref\|NP_985160.1\| AER303Wp [Ashbya gossypii ATCC 10895], gi\|44983948\|gb\|AAS52984.1\| AER30... gi\|44983948 - gi\|44983948\|gb\|AAS52984.1\| AER303Wp [Ashbya gossypii ATCC 10895]	394.0	[0..5]	[836..5]
gi\|39944762, gi\|... - gi\|39944762\|ref\|XP_361918.1\| hypothetical protein MG04363.4 [Magnaporthe grisea 70-15], gb\|EAA50604....	376.0	[0..225]	[836..80]
SPAC18G6.10 - chromosome segregation protein LEM2_SCHPO - Lap-Emerin-Man domain protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lem2 PE=1 ...	370.0	[0..172]	[836..50]
gi\|46105492, gi\|... - gi\|46105492\|ref\|XP_380550.1\| hypothetical protein FG00374.1 [Gibberella zeae PH-1], gi\|42546791\|gb\|E...	363.0	[0..165]	[836..14]
gi\|46096360, gi\|... - gi\|71003349\|ref\|XP_756355.1\| hypothetical protein UM00208.1 [Ustilago maydis 521], ref\|XP_397823.1\| ...	342.0	[0..67]	[837..14]
gi\|40740029, gi\|... - gi\|67526905\|ref\|XP_661514.1\| hypothetical protein AN3910.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	333.0	[0..169]	[836..18]
gi\|114191859, gi... - gi\|115398774\|ref\|XP_001214976.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	320.0	[0..241]	[836..113]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVPSYFDPD YDPSSLRVVD LRNILTEYQI YYPSTAKKAQ LITLFSKLRR AKNGLISMTE  60
   61 LQQKNVPPSS RSPRRRVAGV TNNVTARISS KRKINMVDEA NDTEISKTSQ FEDNVMGMLQ 120
  121 DENVQVLNTN TITISEESEF HASKIAKIDS R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEEITHIPFE TQTELNAAVV NLDNSMESSF SIVQNLTNKD SSVDTATYDF SAEVGNIVTP  60
   61 ASKFLDYDQS YLVNASVSGD PT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [234-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVKVLNTTSP KSENPLNQSS FLSFLGENLK PKFTSRSSSV YASPIKSSLN SLECNPSNLL  60
   61 SVRKNFQQSS DSYLKSNKSF DQLNNLVGLS TGNSENFTPE NNSFSWTHPK KNSSSPLPQS 120
  121 QSSSIFVEHL NQLYEANASI HRPVNPAFST NFGLEASNTS TPEKKKFDSQ KPDDDSVNEI 180
  181 SSDLGLSTTG IDRVEENISL TKDRQPKRPY FSLG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [448-698]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFISLIFSFT KVVNSLWLVL LVVPLLGFVG FWHQEVQRVG FCGVPAEPYP SSLYYLQPGV  60
   61 LRSSIESAYS FAHSLGIEAS CQPCPENAEC GFNRQLFCKE GLKASFPLLA DFGLKPYPRC 120
  121 IPNTVKVNKV EEMVQAFMSI IGKWYYKAPK EFATFESAKN LNGKSFVDNF KDRYYMYKQD 180
  181 IDNVVGLKDF KVYLKTTLNR LYNSKLTRKV LYYLFSPLFT LELWKLRVRG ALSKFPTNCL 240
  241 RSVYSHTVSL M

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [699-844]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYLTSAVISC WRIYLLIGIL AAITGTVVWR IRVYAKKHVV KHGVSVCVSH CIAKLQKTKL  60
   61 KSLTDFSVNP RVEVVQLRSD CFVSGVADDK GLFELVHLPL SIQLEIWEKV VSVLEGMVSV 120
  121 KVWDSERLAK NRAWEWIGVF SDDIAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	2ch0A
Description:	No description for 2ch0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits