YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl40
Organism:	Schizosaccharomyces pombe
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl40.

Description	E-value	Query Range	Subject Range
gi\|114560324, gi... - gi\|114560326\|ref\|XP_001166859.1\| PREDICTED: mitochondrial ribosomal protein L24 isoform 3 [Pan trogl... MRPL24 - mitochondrial ribosomal protein L24	191.0	[0..19]	[243..9]
gi\|12843464 - gi\|12843464\|dbj\|BAB25991.1\| unnamed protein product [Mus musculus]	189.0	[0..21]	[243..2]
RM24_RAT - 39S ribosomal protein L24, mitochondrial OS=Rattus norvegicus GN=Mrpl24 PE=2 SV=1	187.0	[0..19]	[243..9]
gi\|73960888 - gi\|73960888\|ref\|XP_547528.2\| PREDICTED: similar to mitochondrial ribosomal protein L24 isoform 1 [Ca...	183.0	[0..1]	[243..3]
gi\|109067894 - gi\|109067894\|ref\|XP_001098816.1\| PREDICTED: similar to mitochondrial ribosomal protein L24 [Macaca m...	181.0	[0..19]	[243..9]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDLRKLIPR LRGPGTNVLK MKKPLPLHMR TKIREHLNKS DPTVKDDKSA KPELPFGKPA  60
   61 DRVPFWHIFK GDYVYVHQGP LKGKWGRVVE TNKYTNGITI EGVNVRSVKV PIFLLRNKPE 120
  121 DNQDPVIDIA HEVHYANVRL LAHAKTDAGE PVLIPVKLKK HSSTNLRSII RPNIEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.045757
Match:	1vsaS
Description:	No description for 1vsaS was found.

Predicted Domain #2

Region A:
Residues: [177-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQIHTIHLPR PKTEDKPKDP EGKLDTKNPV VSKVTWSPSL SEPPLPPFAI GDLRANWSRR  60
   61 LDRIWGYKKN NDDFTEIAKD LVRAETAAED LIKKPISPNT YSD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits