YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC16E8.13
Organism:	Schizosaccharomyces pombe
Length:	547 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC16E8.13.

Description	E-value	Query Range	Subject Range
gi\|73995208 - gi\|73995208\|ref\|XP_543397.2\| PREDICTED: similar to BRCA1 associated protein [Canis familiaris]	221.0	[0..5]	[515..183]
gi\|47940239 - gi\|47940239\|gb\|AAH72094.1\| LOC432141 protein [Xenopus laevis]	220.0	[0..63]	[525..639]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	220.0	[0..74]	[535..1650]
gi\|109098780 - gi\|109098780\|ref\|XP_001102727.1\| PREDICTED: similar to BRCA1 associated protein [Macaca mulatta]	215.0	[0..5]	[515..172]
gi\|62087336 - gi\|62087336\|dbj\|BAD92115.1\| BRCA1 associated protein variant [Homo sapiens]	210.0	[0..5]	[511..112]
gi\|116090831 - gi\|116090831\|gb\|ABJ55997.1\| RING-10 protein [Gibberella zeae]	208.0	[0..29]	[530..265]
gi\|114647004 - gi\|114647004\|ref\|XP_001138727.1\| PREDICTED: BRCA1 associated protein [Pan troglodytes]	208.0	[0..5]	[511..113]
gi\|39596866, gi\|... - gi\|39596866\|emb\|CAE59093.1\| Hypothetical protein CBG02385 [Caenorhabditis briggsae], gi\|187037456\|em... gi\|157752170 - gi\|157752170\|ref\|XP_001679797.1\| Hypothetical protein CBG02385 [Caenorhabditis briggsae AF16]	203.0	[0..19]	[516..737]

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Predicted Domain #1

Region A:
Residues: [1-547]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYYLEIECE SPVKDIFTCN KRRASKVVGN SFGGDHFNFR LGEIKLLSMD FPSSKVPEVE  60
   61 ETSLGHGVVH LYRVFPSESH EFDAPGLILA ILAIPLYMSP SDVLGFLGEK HCKSIQHIRL 120
  121 LKTKDPNRIM ALLKFKDQAS VIRFYTEFNG KAFSQIDPET CHVLHIDKVN IKYPMESSDS 180
  181 SSTEQQLVGP SSKPFASTTP ALIELPTCVV CLERMDSSIT GLITIVCQHT FHCPCLQKWG 240
  241 NSSCPVCRYT QKVQSSEFQS KCTVCCYDKD LWICLICGNI GCGRYHDAHA KQHYVDTAHC 300
  301 YAMELETQRV WDYAGDNYVH RLLQSETDGK LVELSTDGKS SGWTGSSATE SKLRDKMGLE 360
  361 YTQILVSQLE SQRLYYESHL SNMSQKLSRV NEELVLKTKI ATASSNANTD LRSRVDISES 420
  421 KLKKRDDKLK RVSSQLEHLK HNYEEEKSMN ENLLVRIQTL EKQNTTKSDQ IVSMQFQIND 480
  481 LNEQLRDLMF TISASQEIQK MGQSEELQNG TIVLPNNSTV RSNSVKSKKK KKKKPVVPSS 540
  541 SGSLGTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits