YRC Public Data Repository - Protein Structure Prediction

Protein:	gmh3
Organism:	Schizosaccharomyces pombe
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gmh3.

Description	E-value	Query Range	Subject Range
GMH1_SCHPO - Probable alpha-1,2-galactosyltransferase gmh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)... gmh1 - alpha-1,2-galactosyltransferase Gmh1	347.0	[0..15]	[331..15]
gi\|207346534 - gi\|207346534\|gb\|EDZ73006.1\| YDR245Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404806 - gi\|190404806\|gb\|EDV08073.1\| galactosyltransferase [Saccharomyces cerevisiae RM11-1a] MNN10 - Subunit of a Golgi mannosyltransferase complex also containing Anp1p, Mnn9p, Mnn11p, and Hoc1p that ... MNN10_YEAST - Probable alpha-1,6-mannosyltransferase MNN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...	334.0	[0..8]	[327..47]
gi\|38111193, gi\|... - gi\|39971695\|ref\|XP_367238.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA56808....	308.0	[0..19]	[330..41]
gi\|59802932 - gi\|59802932\|gb\|AAX07671.1\| alpha-1,2-galactosyltransferase-like protein [Magnaporthe grisea]	307.0	[0..19]	[330..41]
gi\|40644059 - gi\|40644059\|emb\|CAE00652.1\| golgi mannosyltransferase complex subunit [Kluyveromyces lactis]	300.0	[0..44]	[329..3]
gi\|50305863, gi\|... - gi\|50305863\|ref\|XP_452892.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642025\|emb\|CAH0174... gi\|49642025 - gi\|49642025\|emb\|CAH01743.1\| KLLA0C15477p [Kluyveromyces lactis]	299.0	[0..44]	[329..3]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLQWKLSR VIFVLLIIGI SSFLIYFQFG NSFSASPALE RLQDVFSKPS VQEYDYLVPL  60
   61 DEDMQGLSTT YHQATINEDD PQEPKSHEIV ILLASDGRSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNMAPETFNQ CIENRINYAK HHNYGFEYVN VSQMNIPPVW AKMPAIIQTM NKHPHAKWIW  60
   61 WLDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	2p6wA
Description:	No description for 2p6wA was found.

Predicted Domain #3

Region A:
Residues: [165-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DALILNTELS IQEHILSPDV LVEKLMKNEP MISPFSADLE RLTPSSYTVD SARSLGLLIS  60
   61 QDLNGLNAGS FFVRRSPMMA LFLDLWGDKS FRENKVADHE QALLGYFVRY HPEIAAIIGI 120
  121 LPQTLINSYP VGQPEMGWKE GHLVIHFAGC WVENRCQVLW DEYRERVH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.26
Match:	2p6wA
Description:	No description for 2p6wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits