YRC Public Data Repository - Protein Structure Prediction

Protein:	gmh3
Organism:	Schizosaccharomyces pombe
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gmh3.

Description	E-value	Query Range	Subject Range
GMH1_SCHPO - Probable alpha-1,2-galactosyltransferase gmh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)... gmh1 - alpha-1,2-galactosyltransferase Gmh1	347.0	[0..15]	[331..15]
gi\|207346534 - gi\|207346534\|gb\|EDZ73006.1\| YDR245Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404806 - gi\|190404806\|gb\|EDV08073.1\| galactosyltransferase [Saccharomyces cerevisiae RM11-1a] MNN10 - Subunit of a Golgi mannosyltransferase complex also containing Anp1p, Mnn9p, Mnn11p, and Hoc1p that ... MNN10_YEAST - Probable alpha-1,6-mannosyltransferase MNN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...	334.0	[0..8]	[327..47]
gi\|38111193, gi\|... - gi\|39971695\|ref\|XP_367238.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA56808....	308.0	[0..19]	[330..41]
gi\|59802932 - gi\|59802932\|gb\|AAX07671.1\| alpha-1,2-galactosyltransferase-like protein [Magnaporthe grisea]	307.0	[0..19]	[330..41]
gi\|40644059 - gi\|40644059\|emb\|CAE00652.1\| golgi mannosyltransferase complex subunit [Kluyveromyces lactis]	300.0	[0..44]	[329..3]
gi\|50305863, gi\|... - gi\|50305863\|ref\|XP_452892.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642025\|emb\|CAH0174... gi\|49642025 - gi\|49642025\|emb\|CAH01743.1\| KLLA0C15477p [Kluyveromyces lactis]	299.0	[0..44]	[329..3]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLQWKLSR VIFVLLIIGI SSFLIYFQFG NSFSASPALE RLQDVFSKPS VQEYDYLVPL  60
   61 DEDMQGLSTT YHQATINEDD PQEPKSHEIV ILLASDGRSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNMAPETFNQ CIENRINYAK HHNYGFEYVN VSQMNIPPVW AKMPAIIQTM NKHPHAKWIW  60
   61 WLDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	2p6wA
Description:	No description for 2p6wA was found.

Predicted Domain #3

Region A:
Residues: [165-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DALILNTELS IQEHILSPDV LVEKLMKNEP MISPFSADLE RLTPSSYTVD SARSLGLLIS  60
   61 QDLNGLNAGS FFVRRSPMMA LFLDLWGDKS FRENKVADHE QALLGYFVRY HPEIAAIIGI 120
  121 LPQTLINSYP VGQPEMGWKE GHLVIHFAGC WVENRCQVLW DEYRERVH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.26
Match:	2p6wA
Description:	No description for 2p6wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits