YRC Public Data Repository - Protein Structure Prediction

Protein:	dbp3
Organism:	Schizosaccharomyces pombe
Length:	578 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dbp3.

Description	E-value	Query Range	Subject Range
gi\|74006746 - gi\|74006746\|ref\|XP_861599.1\| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like ...	310.0	[0..11]	[553..16]
gi\|76659559 - gi\|76659559\|ref\|XP_878250.1\| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like ...	309.0	[0..11]	[553..16]
gi\|109130455 - gi\|109130455\|ref\|XP_001095294.1\| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Macaca m...	307.0	[0..11]	[553..266]
gi\|62087546 - gi\|62087546\|dbj\|BAD92220.1\| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo sapiens]	307.0	[0..11]	[553..28]
gi\|114686445 - gi\|114686445\|ref\|XP_525595.2\| PREDICTED: DEAD box polypeptide 17 [Pan troglodytes]	307.0	[0..102]	[551..206]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFCFRILIL YISLSIDNNY LVTTLISLKE NVFLHIFTLT FLFKAFLLKM AKRSVEELKR  60
   61 SADEEASVKR KEKKSKHEHK KHKKDKPSAD KDRISKKDKK KSKKGKSKTK EESIEINAEE 120
  121 GAKIAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-578]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAIGSANASN HNDEEAYDRY IKKHNISFAD PKSSENLLPI LQFDELDVSA KLREGLKNYK  60
   61 EPTPIQAATW PYLLAGRDVV GIAETGSGKT VAFGIPALQY LNGLSDNKSV PRVLVVSPTR 120
  121 ELAIQTYENL NSLIQGTNLK AVVVYGGAPK SEQARAAKNA SVIIGTPGRL LDLINDGSID 180
  181 CSQVGYLVLD EADRMLDTGF EQDIRNIISH TPDPTRNGSR QTVFFSATWP ESVRALAATF 240
  241 LKDPVKITIG SDELAASQNI TQIVEILDDP RSKERMLDNL LRKHLSSGGK DDKILIFVLY 300
  301 KKEAARVEGT LARKYNVVGI HGDMSQGARL QALNDFKSGK CPVLVATDVA ARGLDIPKVQ 360
  361 LVINVTFPLT IEDYVHRIGR TGRANTKGTA ITFFTPQDKS HAGELVNVLR QAKQDIPEGL 420
  421 FKFGTAVKPK LNAYGSRVVD VPVKAATKIV FD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.0
Match:	2db3A
Description:	No description for 2db3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits