| Protein: | usp109 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 352 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for usp109.
| Description | E-value | Query Range |
Subject Range |
|
|
239.0 | [0..1] | [350..110] |
|
|
237.0 | [0..1] | [350..110] |
|
|
236.0 | [0..1] | [350..110] |
|
|
236.0 | [0..1] | [350..110] |
|
Region A: Residues: [1-256] |
1 11 21 31 41 51
| | | | | |
1 MNEDYIRAIF ENVRKVNYYE DGESGAILKT CCIEFESQDA ARNALERQST QRLISGNPIS 60
61 LDVVPEWQKP SYYMLFISNI DPEVSENDIK YLFQRYNFIS ARVLRCVDGT STSIAFIWLA 120
121 NESDIQNAQV EMQGAFCLKR SILVHSVKSD KNTYLSSPGF YGTPQPLNQF TDPNNTAVYV 180
181 HQLPENITTQ ELRSYFLHFG EILYTQVNNN SGRIVFAQRY FAEQAINEMN NFPLHGVRIQ 240
241 LSWARPPSMA LLPSKQ
|
| Detection Method: |  |
| Confidence: | 20.69897 |
| Match: | 2ghpA |
| Description: | No description for 2ghpA was found. |
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [257-352] |
1 11 21 31 41 51
| | | | | |
1 STYWPALAAP VYPSMKDVPN NPFTPFSPIN PYYAKSWNHT ASAPLLPPGL KNGSDYPYLS 60
61 VPPDILNDSY LAMCEAVNSR LDAESTMLLP VHYSQA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.273 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.238 | a.7.7 | BAG domain |
| View | Download | 0.216 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.212 | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.292 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
