YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC12C2.09c
Organism:	Schizosaccharomyces pombe
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC12C2.09c.

Description	E-value	Query Range	Subject Range
CG5315-PA, CG531... - This gene is referred to in FlyBase by the symbol Dmel\CG5315 (CG5315, FBgn0038984). It is a protein... gi\|220953776, gi... - gi\|220953776\|gb\|ACL89431.1\| CG5315-PA [synthetic construct], gi\|220943902\|gb\|ACL84494.1\| CG5315-PA [...	342.0	[0..3]	[322..114]
gi\|54637593, gi\|... - gi\|54637593\|gb\|EAL26995.1\| GA18798-PA [Drosophila pseudoobscura], gi\|125773203\|ref\|XP_001357860.1\| G...	342.0	[0..3]	[322..109]
gi\|39580647, gi\|... - gi\|39580647\|emb\|CAE61329.1\| Hypothetical protein CBG05167 [Caenorhabditis briggsae], gi\|187035172\|em... gi\|157773563 - gi\|157773563\|ref\|XP_001664847.1\| hypothetical protein CBG05167 [Caenorhabditis briggsae AF16]	335.0	[0..27]	[323..254]
gi\|157106662, gi... - gi\|157106662\|ref\|XP_001649426.1\| adiponectin receptor [Aedes aegypti], gi\|108868805\|gb\|EAT33030.1\| a...	329.0	[0..3]	[321..87]
paqr-2 - status:Partially_confirmed UniProt:Q9N536 protein_id:AAF60489.2	329.0	[0..27]	[321..249]
gi\|56119026, gi\|... - gi\|56119026\|ref\|NP_001007855.1\| adiponectin receptor 2 [Gallus gallus], gi\|53127374\|emb\|CAG31070.1\| ...	329.0	[0..16]	[323..64]
gi\|73997560, gi\|... - gi\|73997564\|ref\|XP_534929.2\| PREDICTED: similar to adiponectin receptor 2 isoform 1 [Canis familiari...	328.0	[0..10]	[323..59]
gi\|48686699, gi\|... - gi\|55742866\|ref\|NP_001007193.1\| adiponectin receptor 2 [Sus scrofa], gi\|48686699\|gb\|AAT46063.1\| adip... gi\|55742866 - ref\|NP_001007193.1\| adiponectin receptor 2 [Sus scrofa]	326.0	[0..18]	[323..67]
ADIPOR2 - adiponectin receptor 2 gi\|114642805 - gi\|114642805\|ref\|XP_508922.2\| PREDICTED: adiponectin receptor 2 [Pan troglodytes]	326.0	[0..17]	[323..66]
gi\|109095057, gi... - gi\|109095059\|ref\|XP_001096853.1\| PREDICTED: similar to adiponectin receptor 2 isoform 3 [Macaca mula...	326.0	[0..17]	[323..66]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESEQLLEK QQDHKWDAAT HADKGITIKT GKIAVSSSDI PLRNRKGLLT WDQLEPWQQD  60
   61 NQYIISGYRP PSFSFYLCVK SIFHVHNESV NIWTHLFGAI VFLFFIFKSE LILKRDTTTA 120
  121 EDVYVITVFL FSAFTMLGCS TFYHTISNHS DDVSKFGNKL DYLGIVVMIV GSFIPCLHYA 180
  181 FAC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [184-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HANFRTLYIG TIIGIGVIVA STCLLDRFRQ PEWRPYRALI FVLMGLFGIF PVIHALKIFS  60
   61 FSEILVRMGL VWLLLQGLFY IVGAVIYALR IPEKWSPGKY DVFGSSHQWF HVCVIIAAFC 120
  121 HFHGVCIAYD YFHERRGCGE M

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits