YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC4H3.04c
Organism:	Schizosaccharomyces pombe
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4H3.04c.

Description	E-value	Query Range	Subject Range
AGAP010011-PA - Protein MEMO1\|protein_coding\|3R:47581200:47582329:-1\|gene:AGAP010011 gi\|58392176, gi\|... - gi\|58392176\|ref\|XP_319155.2\| AGAP010011-PA [Anopheles gambiae str. PEST], gi\|55236230\|gb\|EAA13930.2\|...	391.0	[0..1]	[307..1]
gi\|114576869 - gi\|114576869\|ref\|XP_001164110.1\| PREDICTED: chromosome 2 open reading frame 4 isoform 3 [Pan troglod... MEMO1 - mediator of cell motility 1 gi\|123982438, gi... - gi\|123997099\|gb\|ABM86151.1\| chromosome 2 open reading frame 4 [synthetic construct], gi\|123982438\|gb... gi\|126303134 - gi\|126303134\|ref\|XP_001371460.1\| PREDICTED: similar to CGI-27 protein [Monodelphis domestica] MEMO1_MACFA - Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2 SV=1	387.0	[0..1]	[308..1]
gi\|50740689 - gi\|50740689\|ref\|XP_419531.1\| PREDICTED: similar to CGI-27 protein [Gallus gallus]	387.0	[0..1]	[308..1]
MEMO1_MOUSE - Protein MEMO1 OS=Mus musculus GN=Memo1 PE=1 SV=1	387.0	[0..1]	[308..1]
MEMO1_XENTR - Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1	386.0	[0..1]	[308..1]
MEMO1_RAT - Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=1 SV=1	386.0	[0..1]	[308..1]
MEMO1_XENLA - Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1	386.0	[0..1]	[308..1]
gi\|220944484, gi... - gi\|220954280\|gb\|ACL89683.1\| CG8031-PA [synthetic construct], gi\|220944484\|gb\|ACL84785.1\| CG8031-PA [... CG8031-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8031 (CG8031, FBgn0038110). It is a protein...	383.0	[0..6]	[307..4]
MEMO1_DANRE - Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1	383.0	[0..1]	[308..1]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQAIREATH AGSWYLDDTE LLTKQLKSFI KNPTPETGKR FVISPHAGYM YSGKVASQGF  60
   61 QQLDFSKIQR VFVFGPSHHI FTRKCLVSRA SICSTPLGDL KVDEDLCQKL VASDNSFDSM 120
  121 TLDVDESEHS LEMQFPLLAF HLLKQGCLGK VKIVPIMIGA LTSTTMMAAA KFLSQYIKDE 180
  181 SNSFVISSDF CHWGRRFGYT LYLNDTNQLE DAVLKYKRRG GPTSPKIYES ISNLDHIGMK 240
  241 IIETKSSDDF SEYLKTTQNT ICGRYPIELI MKSMECANFS ERFKFISYAQ SSHVELVTDS 300
  301 SVSYATATA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.66
Match:	1b4uB
Description:	LigB subunit of an aromatic-ring-opening dioxygenase LigAB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits